Clone MXO02477 Report

Search the DGRC for MXO02477

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:77
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG11127-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02477.3prime Sequence

912 bp (753 high quality bases) assembled on 2006-12-21

> MXO02477.3prime
ATGGTCTAGAAAGCTTGCCATGTATTTAAATCTCAACCTTAACGTACGCT
CCTGGATGAGTAGCTCCACCTCGTTGCGGAGCACATTGATGTGTTCCATA
AAGTCCTCGCGAACTGCGTTGCGCCAGTCGTGCAGGCCATCGCTGCCCAC
ATGGTCGCAGTCCACGTAGCGGTGCACGAATCCGGTTGATAACGATAGTT
CCACATCGGATGTACTGGCCAAGAGCTGCGCCGGCGGCAGCTCCAGGCGA
TTCAGCAATGTTTTGAACTCAGATCTTCGCTCCGGGTCGTACTGAACGTT
GTCGGGCAACAGTTTCTTCCGGTCATCGAAGCACACGGACATGGTTGCCA
GTTCGAAGCGCGTGATCTCGGAGGAGAAGTGTCGCAGCTGCTGCTGGAGC
GATCCCTTCACCTGGTCCCCAGAGAACTTTGAGTTGGGGAAGAACAGCTC
GTTGGGGCGGAGTAGAAGGGTGAAGCCGGCGTGGTTCACATTCCGCAGCA
AGCAGTCCGTGAGTAATAGTTGATGGATTCGCGAACGTGTGCCATTGGAC
TGCTGGAAGGGAAAGTTAAAAGGCAGGCCATACAGATGAATGTTGGTGCG
CTCCAACAGGTGATGCACTTCCTCTGGCAGTTCGTCGTGGTTGTAGACCA
GGAAATTCTCTATTCCCAATGCCTGGTGGAACAGGAAGAACTGCAGCAAA
GCATTTTCATTACGTGCGAACTTGGAGGTCATGTTGAAGCCAACGAGATC
AACGCAAACGGTGGCTGGTAGTCGGTGCGCTACAGCTACCACCTTGTCGT
CGTCCTTCTTGCTCGCTGGTCTCAGGTTTCGCAGACGCAGCCTCACTGGA
CTCCTGGTGGTTGGTATGTCCGTGAAGGAGACACTGCCGGGCTGACCGAA
ATCTCGGCTCAC

MXO02477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11127-PA 1350 CG11127-RA 454..1347 912..19 4445 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11127-RA 1484 CG11127-RA 540..1433 912..19 4455 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7464043..7464936 912..19 4455 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 19:10:59 has no hits.

MXO02477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:37 Download gff for MXO02477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-PA 454..1350 18..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:11 Download gff for MXO02477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-PA 454..1350 18..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:14 Download gff for MXO02477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 540..1439 10..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:14 Download gff for MXO02477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 540..1439 10..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:14 Download gff for MXO02477.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7464043..7464942 10..912 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:14 Download gff for MXO02477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3351548..3352447 10..912 99   Minus

MXO02477.5prime Sequence

879 bp (792 high quality bases) assembled on 2006-12-21

> MXO02477.5prime
CAGTCGACATGCGGAAATACCAGCAACTGGTGCTGCTGCTCATCTCCTGC
CTCAGCGTCAGCATCCTGCTGATGTACAAGACCGAGAACAATCGCCTAAA
GTACGTGCTCAAGTACGTCAACTTCTTCGGACGCAACGATGCCGCTGTCC
TCCGCCGCCTGGAGAACGGAACCAAGGAGGACGGGGCGCAGGTGCTGTGG
CGCCCTCTGCCCGTGTGGCAGGTGATCGGAGACTCCTTTCATGCCTACTC
CGCCTTCTGGATGCGCAACGAACTGGTGGCCGGCGGCGAAGCCCACGTTC
TGGTGGTCGGAAAAAAGGGAGCAGTAGTCGACTTCCGGTGCAGCTTGGAC
CTTCTGGGCGGACGCAGTGTGCAGGGAAAGTTTCGTTTTCAGAGGGACTC
CATTGAGAGCCTGGTGGATGACAAGTCTTCCAACTTCACCAGCTATCACT
TCTTCTGCCAGGTGAGCCGAGATTTCGGTCAGCCCGGCAGTGTCTCCTTC
ACGGACATAACAACCACCAGGAGTCCAGTGAGGCTGCGTCTGCGAAACCT
GAGACCAGCGAGCAAGAAGGACGACGACAAGGTGGTAGCTGTAGCGCACC
GACTACCAGCCACCGTTTGCGTTGATCTCGTTGGCTTCAACATGACCTCC
AAGTTCGCACGTAATGAAAATGCTTTGCTGCAGTTCTTCCTGTTCCACCA
GGCATTGGGAATAGAGAATTTCCTGGTCTACAACCACGACGAACTGCCAG
AGGAAGTGCATCACCTGTTGGAGCGCACCAACATTCATCTGTATGGCCTG
CCTTTTAACTTTCCCTTCCAGCAGTCCAATGGCACACGTTCGCGAATCCA
TCAACTATTACTCACGGACTGCTTGCTGC

MXO02477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11127-PA 1350 CG11127-RA 1..871 9..879 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11127-RA 1484 CG11127-RA 87..957 9..879 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7463590..7464460 9..879 4355 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:30:39 has no hits.

MXO02477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:39 Download gff for MXO02477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-PA 1..871 9..879 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:12 Download gff for MXO02477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-PA 1..871 9..879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:19 Download gff for MXO02477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 78..957 1..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:51 Download gff for MXO02477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11127-RA 78..957 1..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:51 Download gff for MXO02477.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7463581..7464460 1..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:19 Download gff for MXO02477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3351086..3351965 1..879 99   Plus