Clone Sequence Records
MXO02478.3prime Sequence
477 bp (477 high quality bases) assembled on 2006-12-21
> MXO02478.3prime
ATGGTCTAGAAAGCTTGCGTCTTCGACGGCATATTTCTGGGTCCACTCGC
GGGCATTGCGAATGGCCTCCGCCTCGTTGACCTTCCACAACTCAGCCACA
TCGTTGGCCAGCGGATCGTCGGGATTGGGTGCACTGAGCAGTGCCTGAAT
GGATAGCAATATGGTCCGGATCTGCAGGGCTGGACTCCACTTGTCCTTCA
GCACGTCGAGGCAAATGCGGCCCAAACGATCGATGTTCGGATGGTAGATC
TTCGTGATGAAGCGCACTTTGGGCGCTGACATTGGATAGTCCTCCGGTAG
GAACAGCTCCAGCTTGAACACGCCGCCCTCGAAGGGCGAATCGTTCGGTC
CGGTCACGATCACATGGAAGTAACGGGCATTGTTCTCATCGGGAATGGCA
TTGATCCCAGGCACTGGCTCCTGCATCAAACGTTGAGTCTCCTTGATGAT
GCGACGTGGCAGGCTGGACATGTCGAC
MXO02478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18319-PA | 456 | ben-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ben-RE | 1810 | CG18319-RE | 166..618 | 471..19 | 2265 | 100 | Minus |
| ben-RD | 1852 | CG18319-RD | 208..660 | 471..19 | 2265 | 100 | Minus |
| ben-RB | 852 | CG18319-RB | 246..698 | 471..19 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13998161..13998613 | 471..19 | 2265 | 100 | Minus |
| 2L | 23513712 | 2L | 14563181..14563558 | 73..450 | 435 | 74.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:02 has no hits.
MXO02478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:40 Download gff for
MXO02478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ben-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:12 Download gff for
MXO02478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18319-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:24 Download gff for
MXO02478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ben-RB | 238..702 | 15..477 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:38 Download gff for
MXO02478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ben-RB | 238..702 | 15..477 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:38 Download gff for
MXO02478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13998153..13998617 | 15..477 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:24 Download gff for
MXO02478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13892186..13892650 | 15..477 | 98 | | Minus |
MXO02478.5prime Sequence
477 bp (477 high quality bases) assembled on 2006-12-21
> MXO02478.5prime
CAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGACTCAACGT
TTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGATGAGAACAA
TGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTCGCCCTTCG
AGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACTATCCAATG
TCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCGAACATCGA
TCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTGGAGTCCAG
CCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGCTCAGTGCA
CCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTGTGGAAGGT
CAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCAGAAATATG
CCGTCGAAGACGCAAGCTTTCTAGACC
MXO02478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18319-PA | 456 | ben-RA | 1..453 | 9..461 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ben-RE | 1810 | CG18319-RE | 166..618 | 9..461 | 2265 | 100 | Plus |
| ben-RD | 1852 | CG18319-RD | 208..660 | 9..461 | 2265 | 100 | Plus |
| ben-RB | 852 | CG18319-RB | 246..698 | 9..461 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13998161..13998613 | 9..461 | 2265 | 100 | Plus |
| 2L | 23513712 | 2L | 14563181..14563558 | 407..30 | 435 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:30 has no hits.
MXO02478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:42 Download gff for
MXO02478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ben-PA | 1..456 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:13 Download gff for
MXO02478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18319-PA | 1..456 | 9..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:11 Download gff for
MXO02478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ben-RB | 236..702 | 1..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:32 Download gff for
MXO02478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ben-RB | 236..702 | 1..465 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:32 Download gff for
MXO02478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13998151..13998617 | 1..465 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:11 Download gff for
MXO02478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13892184..13892650 | 1..465 | 98 | | Plus |
