MXO02479.3prime Sequence
900 bp (814 high quality bases) assembled on 2006-12-21
> MXO02479.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGGTGGTGGGTGAGTGGACTTTGCCGG
CAAACAGTATGTTACCAGTGGACTCCTCCTCGATAAAGAACACAAACGGC
CGGTTTACGTTGAATTCCTCGATGGCGGTGCTGCCACCGAACTTGTTTTC
GATCTCCACAACGGTGGCTGCGTAGGCCTCCGTTCCCTTCTCGTTCACAT
TAATGCCGGCCTTCTGCAGGATGTTAGACACCTTTACTTTGCCGGCGACA
TCAGCGCCGCGGGTTAATCCCGGCAGCGAGGCGCTGTCCTCAAAGATTTC
GCGCACACCCAGGCTGCGCAACGTCTCCTTAAGGTTCTGCTGGTAGTCGA
AATGGAACTTGGGCAGCGTCACCTTCACTTTCACCTCCTCCATGGCCCAC
TGAGCGCTCTTTAGCTCGTCGTTTTCCAGGTTCTTGACCAAGTCATGGAT
GCCATTCAGGGCGTAGGGCAGCAGGACGAACAGGGAGTTCTTGCCCTTGT
AGGGCAGACGCAGAATCTGCGCCTTCAGCTTCTCCGAGGTGGTGTAGTAG
AAGTAGTCGGTCTGCTCCATGAACTCCGCCCGCGACTGGTCGTCCTTGCT
GCGGAAGAAGGATCCCTGGAATGTGGTGGCAAACTGCCGCCGCCACAGAC
CGTTGAAGTAGATCAGATTGGTCAGCAACATTACGCTGCTGCGCACGTTG
TCCGGGGCTACTAGCTGCTGAAGTCTGCCCTGCGTGATGTTGGCGGCCCA
GGCGTTGATGGCATCTGCCGCCGCCTCGGGATTGGTGAAGTCTAGCGCCT
CCACCTCGCTGTCGTAGAAGTGTTTCAGCGTGGCCGTGAACTTCTGCTGT
GTCTCGATGAAGCTGTCCGTGAAGAGCTTGGTGCGCACACTGAGCGTCTC
MXO02479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11331-PA | 1344 | Spn27A-RA | 460..1341 | 900..19 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn27A-RB | 2283 | CG11331-RB | 632..1513 | 900..19 | 4410 | 100 | Minus |
| Spn27A-RA | 1569 | CG11331-RA | 632..1513 | 900..19 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6671835..6672716 | 19..900 | 4410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:25 has no hits.
MXO02479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:43 Download gff for
MXO02479.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 460..1344 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:13 Download gff for
MXO02479.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 460..1344 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:42 Download gff for
MXO02479.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 632..1522 | 8..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:49 Download gff for
MXO02479.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 632..1522 | 8..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:49 Download gff for
MXO02479.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6671826..6672716 | 8..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:42 Download gff for
MXO02479.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6671826..6672716 | 8..900 | 99 | | Plus |
MXO02479.5prime Sequence
801 bp (616 high quality bases) assembled on 2006-12-21
> MXO02479.5prime
CAGTCGACATGACAAAGATGGGCGGAAATTTGGCAGTGATGCTGCTGTCG
CTGTTTTTGAGTGCGTTAGCCACGGGCAACGGCAACTCCATACCGACGAC
CACGACGCCCCAGGGCGTATTCGAAACCCGTACGGACAAGCTGCCCGGTG
GCGCTGCCAGCGTGCCCAGTGGAGCGGGTATCTACGACGATATAGATACC
TTTGTGCCCTTCCGGAGCGACTCGCACGATCCGTTCTCATGGCATCTACT
GAAGACGGTGCTGCAGAACGAGACAGCCGACAAGAATGTGATCATCTCGC
CGTTCTCCGTCAAACTGGTGCTGGCCCTGCTGGCTGAGGCGGCCGGAGCC
GGAACCCAGACGCAAGTGGAGCTGGCCAACACGCAAACAGACATTCGATC
GCAAAATAATGTGCGGGAGTTCTACCGCAAGACACTTAATTCCTTCAAGA
AGGAGAACCAGCTCCACGAGACGCTCAGTGTGCGCACCAAGCTCTTCACG
GACAGCTTCATCGAGACACAGCAGAAGTTCACGGCCACGCTGAAACACTT
CTACGACAGCGAGGTGGAGGCGCTAGACTTCACCAATCCCGAGGCGGCGG
CAGATGCCATCAACGCCTGGGCCGCCAACATCACGCAGGGCAGACTTCAG
CAGCTAGTAGCCCCGGACAACGTGCGCAGCAGCGTAATGTTGCTGACCAA
TCTGATCTACTTCAACGGTCTGTGGCGGCGGCAGTTTGCCACCACATTCC
AGGGATCCTTCTTCCGCAGCAAGGACGACCAGTCGCGGGCGGAGTTCATG
G
MXO02479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11331-PA | 1344 | Spn27A-RA | 1..793 | 9..801 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn27A-RB | 2283 | CG11331-RB | 173..965 | 9..801 | 3965 | 100 | Plus |
| Spn27A-RA | 1569 | CG11331-RA | 173..965 | 9..801 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6672383..6673175 | 801..9 | 3965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:23 has no hits.
MXO02479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:45 Download gff for
MXO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 1..793 | 9..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:14 Download gff for
MXO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11331-PA | 1..793 | 9..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:01 Download gff for
MXO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 168..965 | 1..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:55 Download gff for
MXO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn27A-RA | 168..965 | 1..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:55 Download gff for
MXO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6672383..6673180 | 1..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:01 Download gff for
MXO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6672383..6673180 | 1..801 | 99 | | Minus |
