Clone Sequence Records
MXO02480.3prime Sequence
808 bp (757 high quality bases) assembled on 2006-12-21
> MXO02480.3prime
ATGGTCTAGAAAGCTTGCGCCGTTGTGCGTGATAGTCGGCGGCACATAGA
AGGTGTCTGCTGCCTTGGGCTTCTTCTTTTTGCCGAACCAGCGCTTGGGA
TAGTAGACCTTCTTCTTGTAGATCTGGATGTCGATGTCGTCCCGGTTCTC
GAAGAACCACAGGTTCTGCCGCTTCGCCTCCAGTTCGCTGAGGGTCTTCT
GGATGGTGGCCTTACGCTCCTCCACGCTCTGCGAATCCAGTTGTCGCTGC
ACCGCTGCCTCAAACTTCTTGGCCCACTCCTGATACGACTCGCCGTAGTC
GGCCAGCAGTTTGGGCTCAAACTTCTGCACATTGGCTTTGACGCTGTTCT
CCAGTAGCGATTGAATGGCATTCGATTTGCTACTCTTCTCAACGGCTTCC
TGCAGGGACTTCAGCAGCTCTTCGGATCCCTCCAGCTTGAGGCTTTCAAC
TATGCTCTGTGCGGCTAAAAGAGTCTCCTTGTGCAGGGCAGCTGAGTTCG
AGGCCAGAAAGCTGGAGGCCTCGGGCACTTGTCCGGTTAGGACATAGCCA
AGTAGGGCAACGTTCTGCTTCAGCTCTTTCAAGGACCCTTCGCCGGAGCC
CAATCGAACCATGGCGCGACCCAGTTTCTTCTCTTCGGTATTTTCGCTGG
CGTCGTCGGGGTAATTGCGAATGAACTTCACGCGAACTTTTTCCACTTCA
ACATTTTTGGCAGGAGGTTGAACTTGAGAGGACTCGAAGGGCTTGAACTC
CTTGGCGAAGGACCAGAAGGACTGTAGGGCCAGGGACTCCAGCAACTCGT
TGTTGCAT
MXO02480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-PA | 1221 | CG4882-RA | 429..1218 | 808..19 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-RB | 1626 | CG4882-RB | 741..1530 | 808..19 | 3950 | 100 | Minus |
CG4882-RA | 1397 | CG4882-RA | 512..1301 | 808..19 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23880913..23881588 | 19..694 | 3380 | 100 | Plus |
2R | 25286936 | 2R | 23881720..23881835 | 693..808 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:08:20 has no hits.
MXO02480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:46 Download gff for
MXO02480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 429..1221 | 18..808 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:14 Download gff for
MXO02480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 429..1221 | 18..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:03 Download gff for
MXO02480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 512..1301 | 19..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:44 Download gff for
MXO02480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 512..1301 | 19..808 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:44 Download gff for
MXO02480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23880913..23881587 | 19..693 | 100 | <- | Plus |
2R | 23881721..23881835 | 694..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:03 Download gff for
MXO02480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19768436..19769110 | 19..693 | 100 | <- | Plus |
arm_2R | 19769244..19769358 | 694..808 | 100 | | Plus |
MXO02480.5prime Sequence
832 bp (794 high quality bases) assembled on 2006-12-21
> MXO02480.5prime
CAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCACCCAGGAGA
CTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCACGAGGGACC
GGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGTGGATTTGG
ATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGGACCGGCTG
CTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTGATTCCCAG
TGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGAGACGATAT
CGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACCAGTTCTCT
GGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCGGTGGAATC
TGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAACAACGAGT
TGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCAAGGAGTTC
AAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAATGTTGAAGT
GGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGACGCCAGCG
AAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGATTGGGCTCC
GGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTACTTGGCTA
TGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGCCTCGAACT
CAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCATAGTTGAA
AGCCTCAAGCTGGAGGGATCCGAAGAGCTGCT
MXO02480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-PA | 1221 | CG4882-RA | 1..824 | 9..832 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4882-RB | 1626 | CG4882-RB | 313..1136 | 9..832 | 4120 | 100 | Plus |
CG4882-RA | 1397 | CG4882-RA | 84..907 | 9..832 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23881720..23882063 | 552..209 | 1720 | 100 | Minus |
2R | 25286936 | 2R | 23881307..23881588 | 832..551 | 1410 | 100 | Minus |
2R | 25286936 | 2R | 23882114..23882317 | 212..9 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:23 has no hits.
MXO02480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:48 Download gff for
MXO02480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 1..824 | 9..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:15 Download gff for
MXO02480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-PA | 1..824 | 9..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:15 Download gff for
MXO02480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 75..907 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:04 Download gff for
MXO02480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4882-RA | 75..907 | 1..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:04 Download gff for
MXO02480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23882115..23882326 | 1..211 | 98 | | Minus |
2R | 23881307..23881587 | 552..832 | 100 | <- | Minus |
2R | 23881721..23882060 | 212..551 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:15 Download gff for
MXO02480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19768830..19769110 | 552..832 | 100 | <- | Minus |
arm_2R | 19769244..19769583 | 212..551 | 100 | <- | Minus |
arm_2R | 19769638..19769849 | 1..211 | 98 | | Minus |