Clone MXO02480 Report

Search the DGRC for MXO02480

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:80
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4882-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02480.3prime Sequence

808 bp (757 high quality bases) assembled on 2006-12-21

> MXO02480.3prime
ATGGTCTAGAAAGCTTGCGCCGTTGTGCGTGATAGTCGGCGGCACATAGA
AGGTGTCTGCTGCCTTGGGCTTCTTCTTTTTGCCGAACCAGCGCTTGGGA
TAGTAGACCTTCTTCTTGTAGATCTGGATGTCGATGTCGTCCCGGTTCTC
GAAGAACCACAGGTTCTGCCGCTTCGCCTCCAGTTCGCTGAGGGTCTTCT
GGATGGTGGCCTTACGCTCCTCCACGCTCTGCGAATCCAGTTGTCGCTGC
ACCGCTGCCTCAAACTTCTTGGCCCACTCCTGATACGACTCGCCGTAGTC
GGCCAGCAGTTTGGGCTCAAACTTCTGCACATTGGCTTTGACGCTGTTCT
CCAGTAGCGATTGAATGGCATTCGATTTGCTACTCTTCTCAACGGCTTCC
TGCAGGGACTTCAGCAGCTCTTCGGATCCCTCCAGCTTGAGGCTTTCAAC
TATGCTCTGTGCGGCTAAAAGAGTCTCCTTGTGCAGGGCAGCTGAGTTCG
AGGCCAGAAAGCTGGAGGCCTCGGGCACTTGTCCGGTTAGGACATAGCCA
AGTAGGGCAACGTTCTGCTTCAGCTCTTTCAAGGACCCTTCGCCGGAGCC
CAATCGAACCATGGCGCGACCCAGTTTCTTCTCTTCGGTATTTTCGCTGG
CGTCGTCGGGGTAATTGCGAATGAACTTCACGCGAACTTTTTCCACTTCA
ACATTTTTGGCAGGAGGTTGAACTTGAGAGGACTCGAAGGGCTTGAACTC
CTTGGCGAAGGACCAGAAGGACTGTAGGGCCAGGGACTCCAGCAACTCGT
TGTTGCAT

MXO02480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-PA 1221 CG4882-RA 429..1218 808..19 3950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-RB 1626 CG4882-RB 741..1530 808..19 3950 100 Minus
CG4882-RA 1397 CG4882-RA 512..1301 808..19 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23880913..23881588 19..694 3380 100 Plus
2R 25286936 2R 23881720..23881835 693..808 580 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:08:20 has no hits.

MXO02480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:46 Download gff for MXO02480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 429..1221 18..808 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:14 Download gff for MXO02480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 429..1221 18..808 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:03 Download gff for MXO02480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 512..1301 19..808 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:44 Download gff for MXO02480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 512..1301 19..808 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:44 Download gff for MXO02480.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23880913..23881587 19..693 100 <- Plus
2R 23881721..23881835 694..808 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:03 Download gff for MXO02480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19768436..19769110 19..693 100 <- Plus
arm_2R 19769244..19769358 694..808 100   Plus

MXO02480.5prime Sequence

832 bp (794 high quality bases) assembled on 2006-12-21

> MXO02480.5prime
CAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCACCCAGGAGA
CTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCACGAGGGACC
GGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGTGGATTTGG
ATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGGACCGGCTG
CTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTGATTCCCAG
TGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGAGACGATAT
CGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACCAGTTCTCT
GGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCGGTGGAATC
TGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAACAACGAGT
TGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCAAGGAGTTC
AAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAATGTTGAAGT
GGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGACGCCAGCG
AAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGATTGGGCTCC
GGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTACTTGGCTA
TGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGCCTCGAACT
CAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCATAGTTGAA
AGCCTCAAGCTGGAGGGATCCGAAGAGCTGCT

MXO02480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-PA 1221 CG4882-RA 1..824 9..832 4120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4882-RB 1626 CG4882-RB 313..1136 9..832 4120 100 Plus
CG4882-RA 1397 CG4882-RA 84..907 9..832 4120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23881720..23882063 552..209 1720 100 Minus
2R 25286936 2R 23881307..23881588 832..551 1410 100 Minus
2R 25286936 2R 23882114..23882317 212..9 1020 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:58:23 has no hits.

MXO02480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:48 Download gff for MXO02480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 1..824 9..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:15 Download gff for MXO02480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-PA 1..824 9..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:15 Download gff for MXO02480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 75..907 1..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:04 Download gff for MXO02480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4882-RA 75..907 1..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:04 Download gff for MXO02480.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23882115..23882326 1..211 98   Minus
2R 23881307..23881587 552..832 100 <- Minus
2R 23881721..23882060 212..551 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:15 Download gff for MXO02480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19768830..19769110 552..832 100 <- Minus
arm_2R 19769244..19769583 212..551 100 <- Minus
arm_2R 19769638..19769849 1..211 98   Minus