MXO02481.3prime Sequence
876 bp (805 high quality bases) assembled on 2006-12-21
> MXO02481.3prime
ATGGTCTAGAAAGCTTGCTCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTT
CTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAA
TCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGC
CAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCT
CGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATT
GCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCC
CACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGCT
TGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCAT
AAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGCC
AGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACAG
GCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAGT
TGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCACC
AGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTTT
TAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGCA
GATCGGCGAAGAGATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTTAG
CCAGCTTCATGTTGACTTGGTCGCGG
MXO02481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5725-PD | 1206 | fbl-RD | 408..1203 | 814..19 | 3980 | 100 | Minus |
| CG5725-PB | 1254 | fbl-RB | 456..1251 | 814..19 | 3980 | 100 | Minus |
| CG5725-PA | 1260 | fbl-RA | 462..1257 | 814..19 | 3980 | 100 | Minus |
| CG5725-PC | 1206 | fbl-RC | 408..1203 | 814..19 | 3980 | 100 | Minus |
| CG5725-PE | 1539 | fbl-RE | 741..1536 | 814..19 | 3980 | 100 | Minus |
| CG5725-PD | 1206 | fbl-RD | 345..407 | 876..814 | 315 | 100 | Minus |
| CG5725-PB | 1254 | fbl-RB | 393..455 | 876..814 | 315 | 100 | Minus |
| CG5725-PA | 1260 | fbl-RA | 399..461 | 876..814 | 315 | 100 | Minus |
| CG5725-PC | 1206 | fbl-RC | 345..407 | 876..814 | 315 | 100 | Minus |
| CG5725-PE | 1539 | fbl-RE | 678..740 | 876..814 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RG | 2352 | CG5725-RG | 760..1618 | 876..19 | 4270 | 99.9 | Minus |
| fbl-RF | 1370 | CG5725-RF | 237..1095 | 876..19 | 4270 | 99.9 | Minus |
| fbl-RE | 2386 | CG5725-RE | 794..1652 | 876..19 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20390885..20391179 | 313..19 | 1475 | 100 | Minus |
| 3L | 28110227 | 3L | 20390456..20390634 | 627..449 | 895 | 100 | Minus |
| 3L | 28110227 | 3L | 20390688..20390827 | 450..311 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 20390268..20390393 | 751..626 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 20390083..20390208 | 876..752 | 580 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:31 has no hits.
MXO02481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:50 Download gff for
MXO02481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PA | 399..1260 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:15 Download gff for
MXO02481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PB | 393..1254 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:10 Download gff for
MXO02481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RE | 794..1652 | 19..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:50 Download gff for
MXO02481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RE | 794..1652 | 19..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:50 Download gff for
MXO02481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20390886..20391179 | 19..312 | 100 | | Minus |
| 3L | 20390083..20390208 | 752..876 | 99 | -> | Minus |
| 3L | 20390268..20390393 | 626..751 | 100 | -> | Minus |
| 3L | 20390458..20390634 | 449..625 | 100 | -> | Minus |
| 3L | 20390690..20390825 | 313..448 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:10 Download gff for
MXO02481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20383183..20383308 | 752..876 | 99 | -> | Minus |
| arm_3L | 20383368..20383493 | 626..751 | 100 | -> | Minus |
| arm_3L | 20383558..20383734 | 449..625 | 100 | -> | Minus |
| arm_3L | 20383790..20383925 | 313..448 | 100 | -> | Minus |
| arm_3L | 20383986..20384279 | 19..312 | 100 | | Minus |
MXO02481.5prime Sequence
732 bp (702 high quality bases) assembled on 2006-12-21
> MXO02481.5prime
CAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATCAGTTGGCG
AGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTCACCAAGCT
GGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGATCGCGAGG
CTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACTCGGCGTAC
GGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAATGTCGAGAT
ACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGACCACGGACA
TGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCGAGCTGGTG
ACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAGCAGGATTT
CCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCTGGACACGC
TCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGGAGTGCTAC
TACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAGCAGTTCAA
TTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATCCGGAGTCT
CCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTTCGGGCACG
AGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTCACCGGCTG
CACATCCTTCGAAGAGGCCATCCCACTGGCCA
MXO02481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5725-PB | 1254 | fbl-RB | 1..724 | 9..732 | 3595 | 99.8 | Plus |
| CG5725-PA | 1260 | fbl-RA | 52..730 | 54..732 | 3370 | 99.8 | Plus |
| CG5725-PE | 1539 | fbl-RE | 332..1009 | 55..732 | 3365 | 99.8 | Plus |
| CG5725-PD | 1206 | fbl-RD | 1..676 | 57..732 | 3355 | 99.8 | Plus |
| CG5725-PC | 1206 | fbl-RC | 1..676 | 57..732 | 3355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fbl-RB | 1910 | CG5725-RB | 384..1108 | 8..732 | 3610 | 99.9 | Plus |
| fbl-RC | 2093 | CG5725-RC | 153..832 | 53..732 | 3385 | 99.9 | Plus |
| fbl-RA | 1866 | CG5725-RA | 382..1064 | 50..732 | 3385 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20389913..20390208 | 231..526 | 1480 | 100 | Plus |
| 3L | 28110227 | 3L | 20388668..20388847 | 54..233 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 20390268..20390393 | 527..652 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20390456..20390537 | 651..732 | 395 | 98.8 | Plus |
| 3L | 28110227 | 3L | 20384812..20384858 | 8..54 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:17 has no hits.
MXO02481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:52 Download gff for
MXO02481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PB | 1..723 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:16 Download gff for
MXO02481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5725-PB | 1..723 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:39 Download gff for
MXO02481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 376..1107 | 1..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:46 Download gff for
MXO02481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fbl-RB | 376..1107 | 1..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:46 Download gff for
MXO02481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20384804..20384858 | 1..54 | 92 | -> | Plus |
| 3L | 20388669..20388847 | 55..233 | 100 | -> | Plus |
| 3L | 20389916..20390208 | 234..526 | 100 | -> | Plus |
| 3L | 20390268..20390393 | 527..652 | 100 | -> | Plus |
| 3L | 20390458..20390536 | 653..731 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:39 Download gff for
MXO02481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20383368..20383493 | 527..652 | 100 | -> | Plus |
| arm_3L | 20383558..20383636 | 653..731 | 98 | | Plus |
| arm_3L | 20383016..20383308 | 234..526 | 100 | -> | Plus |
| arm_3L | 20377904..20377958 | 1..54 | 92 | -> | Plus |
| arm_3L | 20381769..20381947 | 55..233 | 100 | -> | Plus |
