MXO02482.3prime Sequence
360 bp (360 high quality bases) assembled on 2006-12-21
> MXO02482.3prime
ATGGTCTAGAAAGCTTGCCTCGCTCTCATCATCGTCGTCCTCGTCGGACT
CCTCCTTCTTGCTCTTCTTCGCCACCTTTTTCGCTGGTTTCGCGCGCTTC
TTGGCTCCACCACCGTTGGCAGCACTGCTGCCACCATTGGCCTCGAACTC
CTTGACCGCCCGATCGTAGTCGTCCTTGGCCTTAGCAGCCTTGGCCTCCC
ACTCAGACTTGTCCTTCATTGCCCTCCATAATTCACCACCGCGCTTGGCC
ACCTCGGTGACCTTGATGCCGGGATTCTCGCGCTTGATCGACTCGCGGGC
ACTGTTGAGCCACAGCATGTAGGCGGAGAGTGGGCGTTTTGGCTTATCAG
ACATGTCGAC
MXO02482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17950-PA | 339 | HmgD-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
CG17950-PB | 339 | HmgD-RB | 1..336 | 354..19 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1005 | 354..19 | 1680 | 100 | Minus |
HmgD-RC | 967 | CG17950-RC | 142..477 | 354..19 | 1680 | 100 | Minus |
HmgD-RB | 1279 | CG17950-RB | 94..429 | 354..19 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715877 | 204..19 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21715468..21715618 | 354..204 | 755 | 100 | Minus |
2R | 25286936 | 2R | 21698391..21698510 | 208..327 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:07:09 has no hits.
MXO02482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:53 Download gff for
MXO02482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-PB | 1..339 | 18..354 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:16 Download gff for
MXO02482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17950-PB | 1..339 | 18..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:18 Download gff for
MXO02482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 88..430 | 19..360 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:10 Download gff for
MXO02482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 87..429 | 19..360 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:10 Download gff for
MXO02482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715461..21715617 | 205..360 | 97 | -> | Minus |
2R | 21715692..21715877 | 19..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:18 Download gff for
MXO02482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602966..17603122 | 205..360 | 97 | -> | Minus |
arm_2R | 17603197..17603382 | 19..204 | 100 | | Minus |
MXO02482.5prime Sequence
360 bp (360 high quality bases) assembled on 2006-12-21
> MXO02482.5prime
CAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCTACATGCTG
TGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCCGGCATCAA
GGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGCAATGAAGG
ACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACGACTACGAT
CGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCTGCCAACGG
TGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGCGAAGAAGA
GCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCGAGGCAAGC
TTTCTAGACC
MXO02482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17950-PA | 339 | HmgD-RA | 1..336 | 9..344 | 1680 | 100 | Plus |
CG17950-PB | 339 | HmgD-RB | 1..336 | 9..344 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1005 | 9..344 | 1680 | 100 | Plus |
HmgD-RC | 967 | CG17950-RC | 142..477 | 9..344 | 1680 | 100 | Plus |
HmgD-RB | 1279 | CG17950-RB | 94..429 | 9..344 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715877 | 159..344 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21715468..21715618 | 9..159 | 755 | 100 | Plus |
2R | 25286936 | 2R | 21698391..21698510 | 155..36 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:09:02 has no hits.
MXO02482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:55 Download gff for
MXO02482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-PB | 1..339 | 9..345 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:17 Download gff for
MXO02482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17950-PB | 1..339 | 9..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:37 Download gff for
MXO02482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 86..430 | 1..344 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:11 Download gff for
MXO02482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 85..429 | 1..344 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:11 Download gff for
MXO02482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715459..21715617 | 1..158 | 97 | -> | Plus |
2R | 21715692..21715877 | 159..344 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:37 Download gff for
MXO02482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602964..17603122 | 1..158 | 97 | -> | Plus |
arm_2R | 17603197..17603382 | 159..344 | 100 | | Plus |