Clone MXO02482 Report

Search the DGRC for MXO02482

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:82
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptHmgD-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02482.3prime Sequence

360 bp (360 high quality bases) assembled on 2006-12-21

> MXO02482.3prime
ATGGTCTAGAAAGCTTGCCTCGCTCTCATCATCGTCGTCCTCGTCGGACT
CCTCCTTCTTGCTCTTCTTCGCCACCTTTTTCGCTGGTTTCGCGCGCTTC
TTGGCTCCACCACCGTTGGCAGCACTGCTGCCACCATTGGCCTCGAACTC
CTTGACCGCCCGATCGTAGTCGTCCTTGGCCTTAGCAGCCTTGGCCTCCC
ACTCAGACTTGTCCTTCATTGCCCTCCATAATTCACCACCGCGCTTGGCC
ACCTCGGTGACCTTGATGCCGGGATTCTCGCGCTTGATCGACTCGCGGGC
ACTGTTGAGCCACAGCATGTAGGCGGAGAGTGGGCGTTTTGGCTTATCAG
ACATGTCGAC

MXO02482.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17950-PA 339 HmgD-RA 1..336 354..19 1680 100 Minus
CG17950-PB 339 HmgD-RB 1..336 354..19 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-RD 1495 CG17950-RD 670..1005 354..19 1680 100 Minus
HmgD-RC 967 CG17950-RC 142..477 354..19 1680 100 Minus
HmgD-RB 1279 CG17950-RB 94..429 354..19 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21715692..21715877 204..19 930 100 Minus
2R 25286936 2R 21715468..21715618 354..204 755 100 Minus
2R 25286936 2R 21698391..21698510 208..327 195 77.5 Plus
Blast to na_te.dros performed on 2014-11-28 21:07:09 has no hits.

MXO02482.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:53 Download gff for MXO02482.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-PB 1..339 18..354 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:16 Download gff for MXO02482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17950-PB 1..339 18..354 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:18 Download gff for MXO02482.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 88..430 19..360 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:10 Download gff for MXO02482.3prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 87..429 19..360 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:10 Download gff for MXO02482.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21715461..21715617 205..360 97 -> Minus
2R 21715692..21715877 19..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:18 Download gff for MXO02482.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17602966..17603122 205..360 97 -> Minus
arm_2R 17603197..17603382 19..204 100   Minus

MXO02482.5prime Sequence

360 bp (360 high quality bases) assembled on 2006-12-21

> MXO02482.5prime
CAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCTACATGCTG
TGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCCGGCATCAA
GGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGCAATGAAGG
ACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACGACTACGAT
CGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCTGCCAACGG
TGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGCGAAGAAGA
GCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCGAGGCAAGC
TTTCTAGACC

MXO02482.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17950-PA 339 HmgD-RA 1..336 9..344 1680 100 Plus
CG17950-PB 339 HmgD-RB 1..336 9..344 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
HmgD-RD 1495 CG17950-RD 670..1005 9..344 1680 100 Plus
HmgD-RC 967 CG17950-RC 142..477 9..344 1680 100 Plus
HmgD-RB 1279 CG17950-RB 94..429 9..344 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21715692..21715877 159..344 930 100 Plus
2R 25286936 2R 21715468..21715618 9..159 755 100 Plus
2R 25286936 2R 21698391..21698510 155..36 195 77.5 Minus
Blast to na_te.dros performed on 2014-11-28 21:09:02 has no hits.

MXO02482.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:55 Download gff for MXO02482.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-PB 1..339 9..345 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:17 Download gff for MXO02482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17950-PB 1..339 9..345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:37 Download gff for MXO02482.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RA 86..430 1..344 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:11 Download gff for MXO02482.5prime
Subject Subject Range Query Range Percent Splice Strand
HmgD-RB 85..429 1..344 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:11 Download gff for MXO02482.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21715459..21715617 1..158 97 -> Plus
2R 21715692..21715877 159..344 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:37 Download gff for MXO02482.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17602964..17603122 1..158 97 -> Plus
arm_2R 17603197..17603382 159..344 100   Plus