Clone MXO02483 Report

Search the DGRC for MXO02483

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:83
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptProsbeta7-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02483.3prime Sequence

828 bp (828 high quality bases) assembled on 2006-12-21

> MXO02483.3prime
ATGGTCTAGAAAGCTTGCGTATCCCTTTATGGTTTCGGCGAATGTCCAGT
TTTCGTTAACTTGGAAGGGCCCCTCCACGCCGCATCCGTTGACGCTGCAC
ACGCCCACAGTGTATTGGGAAATATTACGAGTATCGCGGTAGTAAAGCAC
CTCCATGCATGTGCGGATCAGTTCGGAAGCTTCTACGGCGGTAAAGTCCC
TGTCCTTGGGCTTCTTCTCACGGACCAGCGGAACGGCCAAATGGCGGGCA
AAACCAGTGGCCACCACGTAGTCCTCGTAGGATCGTCCACGGAGATCCAC
GTTGGCCAGGTACGGAGTCCCCTCGTTGTCCACGCCGCCGACAACCACGT
CAATGTAGAGGGGGTTCATCCGCGAACGACGGTTGTAGAGCACACGGGTC
ATCCAACTGGCCAAGGACTTGGGCTTCATCTCGATGTTGTCGTCGCAGCA
CTGGTCCTCGATCATCTTCTGGTCGATGTTGCGCTTGATGGACTGGATGT
CAGCGAAGTCGCCGCTCCCGCCGAGCAGGATGTTCTTGTTGACCTTAAAG
ACGCGCTCAATGTTTTGGTAGCGGGCCATGGATCCGTAAGACACCAGGGT
GTCGGCGGCCAGCATCACTCCTGAATCATAGCGAATGCCAAGCACGGAAG
TGCCCGTGGTGCTGGAAGCAGTGCTGTGCTTGGTTCCATAGGGTCCCATT
GTGGTCAGCTCCCGCGGTAGCTGCTGGACCGGCGTCTGTCCGCCCGTGAA
GTTGTAGAACTCGCCGGGAGCGGGTCCGTTCTGCCACATGGGCTGCGCTA
GGCTGTTGTAGTTGTTCAACATGTCGAC

MXO02483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12000-PA 807 CG12000-RA 1..804 822..19 4020 100 Minus
CG12000-PB 807 CG12000-RB 1..804 822..19 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 100..904 823..19 4025 100 Minus
Prosbeta7-RA 1215 CG12000-RA 289..1093 823..19 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 169..674 2515 99.8 Plus
3R 32079331 3R 5357924..5358076 671..823 765 100 Plus
3R 32079331 3R 5357134..5357284 19..169 755 100 Plus
Blast to na_te.dros performed 2014-11-28 21:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 488..419 109 63.5 Minus

MXO02483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:56 Download gff for MXO02483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..807 18..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:17 Download gff for MXO02483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..807 18..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:55 Download gff for MXO02483.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 285..1099 13..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:48 Download gff for MXO02483.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 285..1099 13..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:48 Download gff for MXO02483.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5357128..5357283 13..168 98 <- Plus
3R 5357355..5357856 169..670 100 <- Plus
3R 5357924..5358079 671..828 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:55 Download gff for MXO02483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1182850..1183005 13..168 98 <- Plus
arm_3R 1183077..1183578 169..670 100 <- Plus
arm_3R 1183646..1183801 671..828 98   Plus

MXO02483.5prime Sequence

752 bp (751 high quality bases) assembled on 2006-12-21

> MXO02483.5prime
CAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCATGTGGCAG
AACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGACAGACGCC
GGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTATGGAACCA
AGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTGGCATTCGC
TATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCTTACGGATC
CATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAACAAGAACA
TCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCATCAAGCGC
AACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGACAACATCGA
GATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCTCTACAACC
GTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCGGCGGCGTG
GACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGTGGACGATC
CTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTTGGCCGTTC
CGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCGCCGTAGAA
GCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTACCGCGATAC
TCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAACGGATGCG
GC

MXO02483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12000-PA 807 CG12000-RA 1..744 9..752 3720 100 Plus
CG12000-PB 807 CG12000-RB 1..744 9..752 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 100..844 8..752 3725 100 Plus
Prosbeta7-RA 1215 CG12000-RA 289..1033 8..752 3725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 662..157 2515 99.8 Minus
3R 32079331 3R 5357924..5358076 160..8 765 100 Minus
3R 32079331 3R 5357194..5357284 752..662 455 100 Minus
Blast to na_te.dros performed 2014-11-28 20:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 343..412 109 63.5 Plus

MXO02483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:29:58 Download gff for MXO02483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..744 9..752 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:17 Download gff for MXO02483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..744 9..752 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:20 Download gff for MXO02483.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 283..1033 1..752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:45 Download gff for MXO02483.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 283..1033 1..752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:45 Download gff for MXO02483.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5357194..5357283 663..752 100 <- Minus
3R 5357355..5357856 161..662 100 <- Minus
3R 5357924..5358081 1..160 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:20 Download gff for MXO02483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1182916..1183005 663..752 100 <- Minus
arm_3R 1183077..1183578 161..662 100 <- Minus
arm_3R 1183646..1183803 1..160 97   Minus