MXO02484.3prime Sequence
905 bp (737 high quality bases) assembled on 2006-12-21
> MXO02484.3prime
ATGGTCTAGAAAGCTTGCGTTCGTGTACTGATTCTTGAAGGTAAACTCAG
GATGCCTTTCCACACCATGGAAGAATGCAAAGTCACAGATTCGAATATTC
TGGTCCAGGCTAGACAACTTGGCCACCTCCTCGGCCGTCAGTTCGAAATC
GAAGACGTCCAGATTCTGTTTAAGGCGAGCGGGATTCGTGCTCTTGGGAA
TGGCGGATACACCAGTGTCGATAATCCAGCGGAGGAGGACCTGCGCTGGC
GTCTTGCCATGGCTTGCGGCAATCTCCTTCACCTCAGGGATGTCCATCAG
GTCCGGCAGATCTCTCACGATGCCCGCTCCAGCATTAAACTTGGCGATTC
CCTTGGATCCCAACGGGGAGTAGGCAGTTACGGTAATGTTTTCGGACTTG
CAGAAGTCGACCAGATCTCGCTGCTGCAAATAAACGTGGTGCTCAATCTG
GTTGTTGGCCGGCCGGATCTTGCAGTTCTTCAACAGACGGGCCACCTGAT
CCTTGCTGAAGTTGGATACCCCAATGGACTTGGTGAGACCCTTCTCCACC
AGGGCCTCCATAGCAACCCAGATGGCTGCGTGGTTCGTGGTAACGTCGAC
CTCCATTAGGCCCTCCTTGTCGAGCTTAAAGCTTCCGTCCTCGTTGATAT
TAATTGTGAAGGGAGTGTGCACCAAATATAAGTCCACATAGTCCAGTTGC
AGATCTTCCAGTGACTTTTTGATGGTTGGCTCAACTTCGTGGGGGCGGTT
GGAAACGGGTGGCACCTTGGTCACAATGAACAGCTCCTCCCGCTTGACCT
TGCCGGCGTCCAGCCAACGCTTTANGACTCTTCCGATGGCCTTCTCATTG
CCGTAGACTGGCGCCGTATCTATGTGGCGATACCCAGCTTTCCAAGCCGC
ATCGA
MXO02484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 990 | CG2767-RA | 101..987 | 905..19 | 4366 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 244..1130 | 905..19 | 4394 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006217..8006783 | 65..631 | 2820 | 99.8 | Plus |
3R | 32079331 | 3R | 8007332..8007484 | 753..905 | 724 | 98 | Plus |
3R | 32079331 | 3R | 8006837..8006964 | 625..752 | 640 | 100 | Plus |
3R | 32079331 | 3R | 8006103..8006149 | 19..65 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:52 has no hits.
MXO02484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:00 Download gff for
MXO02484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 102..990 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:18 Download gff for
MXO02484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 102..990 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:57 Download gff for
MXO02484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 245..1133 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:50 Download gff for
MXO02484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 245..1133 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:50 Download gff for
MXO02484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8006099..8006148 | 15..64 | 96 | <- | Plus |
3R | 8006217..8006776 | 65..624 | 100 | <- | Plus |
3R | 8006837..8006964 | 625..752 | 100 | <- | Plus |
3R | 8007332..8007483 | 753..904 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:57 Download gff for
MXO02484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3831821..3831870 | 15..64 | 96 | <- | Plus |
arm_3R | 3831939..3832498 | 65..624 | 100 | <- | Plus |
arm_3R | 3832559..3832686 | 625..752 | 100 | <- | Plus |
arm_3R | 3833054..3833205 | 753..904 | 98 | | Plus |
MXO02484.5prime Sequence
814 bp (752 high quality bases) assembled on 2006-12-21
> MXO02484.5prime
CAGTCGACATGGTCAACACCAAGTTCTTAACGTTCAACAATGGAGAGAAG
ATGCCCGTGATTGGCATCGGCACCTGGCAGGCATCTGATGAGGAAATCGA
AACCGCCATCGATGCGGCTTTGGAAGCTGGGTATCGCCACATAGATACGG
CGCCAGTCTACGGCAATGAGAAGGCCATCGGAAGAGTCCTAAAGCGTTGG
CTGGACGCCGGCAAGGTCAAGCGGGAGGAGCTGTTCATTGTGACCAAGGT
GCCACCCGTTTCCAACCGCCCCCACGAAGTTGAGCCAACCATCAAAAAGT
CACTGGAAGATCTGCAACTGGACTATGTGGACTTATATTTGGTGCACACT
CCCTTCACAATTAATATCAACGAGGACGGAAGCTTTAAGCTCGACAAGGA
GGGCCTAATGGAGGTCGACGTTACCACGAACCACGCAGCCATCTGGGTTG
CTATGGAGGCCCTGGTGGAGAAGGGTCTCACCAAGTCCATTGGGGTATCC
AACTTCAGCAAGGATCAGGTGGCCCGTCTGTTGAAGAACTGCAAGATCCG
GCCGGCCAACAACCAGATTGAGCACCACGTTTATTTGCAGCAGCGAGATC
TGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCTACTCCCCG
TTGGGATCCAAGGGAATCGCCAAGTTTAATGCTGGAGCGGGCATCGTGAG
AGATCTGCCGGACCTGATGGACATCCCTGAGGTGAAGGAGATTGCCGCAA
GCCATGGCAAGACGCCAGCGCAGGTCCTCCTCCGCTGGATTATCGACACT
GGTGTATCCGCCAT
MXO02484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 990 | CG2767-RA | 1..806 | 9..814 | 4030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 144..949 | 9..814 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006352..8006783 | 814..383 | 2145 | 99.8 | Minus |
3R | 32079331 | 3R | 8007332..8007516 | 261..77 | 925 | 100 | Minus |
3R | 32079331 | 3R | 8006837..8006964 | 389..262 | 640 | 100 | Minus |
3R | 32079331 | 3R | 8007895..8007967 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:35 has no hits.
MXO02484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:02 Download gff for
MXO02484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 1..806 | 9..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:19 Download gff for
MXO02484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 1..806 | 9..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:16 Download gff for
MXO02484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 135..949 | 1..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:36 Download gff for
MXO02484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 135..949 | 1..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:36 Download gff for
MXO02484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8006352..8006776 | 390..814 | 100 | <- | Minus |
3R | 8006837..8006964 | 262..389 | 100 | <- | Minus |
3R | 8007332..8007512 | 81..261 | 100 | <- | Minus |
3R | 8007896..8007976 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:16 Download gff for
MXO02484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3832074..3832498 | 390..814 | 100 | <- | Minus |
arm_3R | 3832559..3832686 | 262..389 | 100 | <- | Minus |
arm_3R | 3833054..3833234 | 81..261 | 100 | <- | Minus |
arm_3R | 3833618..3833698 | 1..80 | 95 | | Minus |