Clone MXO02484 Report

Search the DGRC for MXO02484

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:84
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG2767-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02484.3prime Sequence

905 bp (737 high quality bases) assembled on 2006-12-21

> MXO02484.3prime
ATGGTCTAGAAAGCTTGCGTTCGTGTACTGATTCTTGAAGGTAAACTCAG
GATGCCTTTCCACACCATGGAAGAATGCAAAGTCACAGATTCGAATATTC
TGGTCCAGGCTAGACAACTTGGCCACCTCCTCGGCCGTCAGTTCGAAATC
GAAGACGTCCAGATTCTGTTTAAGGCGAGCGGGATTCGTGCTCTTGGGAA
TGGCGGATACACCAGTGTCGATAATCCAGCGGAGGAGGACCTGCGCTGGC
GTCTTGCCATGGCTTGCGGCAATCTCCTTCACCTCAGGGATGTCCATCAG
GTCCGGCAGATCTCTCACGATGCCCGCTCCAGCATTAAACTTGGCGATTC
CCTTGGATCCCAACGGGGAGTAGGCAGTTACGGTAATGTTTTCGGACTTG
CAGAAGTCGACCAGATCTCGCTGCTGCAAATAAACGTGGTGCTCAATCTG
GTTGTTGGCCGGCCGGATCTTGCAGTTCTTCAACAGACGGGCCACCTGAT
CCTTGCTGAAGTTGGATACCCCAATGGACTTGGTGAGACCCTTCTCCACC
AGGGCCTCCATAGCAACCCAGATGGCTGCGTGGTTCGTGGTAACGTCGAC
CTCCATTAGGCCCTCCTTGTCGAGCTTAAAGCTTCCGTCCTCGTTGATAT
TAATTGTGAAGGGAGTGTGCACCAAATATAAGTCCACATAGTCCAGTTGC
AGATCTTCCAGTGACTTTTTGATGGTTGGCTCAACTTCGTGGGGGCGGTT
GGAAACGGGTGGCACCTTGGTCACAATGAACAGCTCCTCCCGCTTGACCT
TGCCGGCGTCCAGCCAACGCTTTANGACTCTTCCGATGGCCTTCTCATTG
CCGTAGACTGGCGCCGTATCTATGTGGCGATACCCAGCTTTCCAAGCCGC
ATCGA

MXO02484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2767-PA 990 CG2767-RA 101..987 905..19 4366 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2767-RA 1309 CG2767-RA 244..1130 905..19 4394 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8006217..8006783 65..631 2820 99.8 Plus
3R 32079331 3R 8007332..8007484 753..905 724 98 Plus
3R 32079331 3R 8006837..8006964 625..752 640 100 Plus
3R 32079331 3R 8006103..8006149 19..65 235 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:57:52 has no hits.

MXO02484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:00 Download gff for MXO02484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-PA 102..990 15..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:18 Download gff for MXO02484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-PA 102..990 15..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:57 Download gff for MXO02484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-RA 245..1133 15..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:50 Download gff for MXO02484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-RA 245..1133 15..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:50 Download gff for MXO02484.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8006099..8006148 15..64 96 <- Plus
3R 8006217..8006776 65..624 100 <- Plus
3R 8006837..8006964 625..752 100 <- Plus
3R 8007332..8007483 753..904 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:57 Download gff for MXO02484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3831821..3831870 15..64 96 <- Plus
arm_3R 3831939..3832498 65..624 100 <- Plus
arm_3R 3832559..3832686 625..752 100 <- Plus
arm_3R 3833054..3833205 753..904 98   Plus

MXO02484.5prime Sequence

814 bp (752 high quality bases) assembled on 2006-12-21

> MXO02484.5prime
CAGTCGACATGGTCAACACCAAGTTCTTAACGTTCAACAATGGAGAGAAG
ATGCCCGTGATTGGCATCGGCACCTGGCAGGCATCTGATGAGGAAATCGA
AACCGCCATCGATGCGGCTTTGGAAGCTGGGTATCGCCACATAGATACGG
CGCCAGTCTACGGCAATGAGAAGGCCATCGGAAGAGTCCTAAAGCGTTGG
CTGGACGCCGGCAAGGTCAAGCGGGAGGAGCTGTTCATTGTGACCAAGGT
GCCACCCGTTTCCAACCGCCCCCACGAAGTTGAGCCAACCATCAAAAAGT
CACTGGAAGATCTGCAACTGGACTATGTGGACTTATATTTGGTGCACACT
CCCTTCACAATTAATATCAACGAGGACGGAAGCTTTAAGCTCGACAAGGA
GGGCCTAATGGAGGTCGACGTTACCACGAACCACGCAGCCATCTGGGTTG
CTATGGAGGCCCTGGTGGAGAAGGGTCTCACCAAGTCCATTGGGGTATCC
AACTTCAGCAAGGATCAGGTGGCCCGTCTGTTGAAGAACTGCAAGATCCG
GCCGGCCAACAACCAGATTGAGCACCACGTTTATTTGCAGCAGCGAGATC
TGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCTACTCCCCG
TTGGGATCCAAGGGAATCGCCAAGTTTAATGCTGGAGCGGGCATCGTGAG
AGATCTGCCGGACCTGATGGACATCCCTGAGGTGAAGGAGATTGCCGCAA
GCCATGGCAAGACGCCAGCGCAGGTCCTCCTCCGCTGGATTATCGACACT
GGTGTATCCGCCAT

MXO02484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2767-PA 990 CG2767-RA 1..806 9..814 4030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2767-RA 1309 CG2767-RA 144..949 9..814 4030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8006352..8006783 814..383 2145 99.8 Minus
3R 32079331 3R 8007332..8007516 261..77 925 100 Minus
3R 32079331 3R 8006837..8006964 389..262 640 100 Minus
3R 32079331 3R 8007895..8007967 81..9 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:01:35 has no hits.

MXO02484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:02 Download gff for MXO02484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-PA 1..806 9..814 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:19 Download gff for MXO02484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-PA 1..806 9..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:16 Download gff for MXO02484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-RA 135..949 1..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:36 Download gff for MXO02484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2767-RA 135..949 1..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:36 Download gff for MXO02484.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8006352..8006776 390..814 100 <- Minus
3R 8006837..8006964 262..389 100 <- Minus
3R 8007332..8007512 81..261 100 <- Minus
3R 8007896..8007976 1..80 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:16 Download gff for MXO02484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3832074..3832498 390..814 100 <- Minus
arm_3R 3832559..3832686 262..389 100 <- Minus
arm_3R 3833054..3833234 81..261 100 <- Minus
arm_3R 3833618..3833698 1..80 95   Minus