MXO02485.3prime Sequence
706 bp (650 high quality bases) assembled on 2006-12-21
> MXO02485.3prime
ATGGTCTAGAAAGCTTGCGAACTCGTCGTTGAACGGGTAGTACTTATGGC
CCGACATTCCCGAAAAGGGTACCGTGCGCTGCCCGGTGTGATACTGCTCC
ATGCCGGCGACGTCGTCTGGACTCAGCTCGAAGTCGAAGACGCGGAAGTT
CTCCTCGATGCGGGCCTTGTTCGACGACTTGGGCAGTGGCACCACGCCTA
GCTGGACCAGATAACGCAGGCAGATCTGTGCCGTGGTGCGGCCGTACTTC
TTGGCCAGATTCTGGGCATGCTCGTCGTAGAGGAAGGGCGGCCACTGCCG
AGCGGGCTGGGGACGTGCCAGGGGGCAGTAGGCGCAGATGACCAGTCCGT
GGCGCTTGGCATGCTCCCGGAGCTGGCGCTGCTGAAAGCCTGGGTGGCAC
TCCACCTGGTTCACTACCGGCCGGATGCGGCAGTTGGCTAGCACTCGCTC
CGTCTGCGCGGCGTTGAAGTTGGACAGGCCGATGCTGCGCGTCAGGCCCA
GATCCACCAGCTTCTCCATCTCGCGCCAGGTGTCCAGATAGTCCACGTCC
GTCAGCTCCAGGGTTCCGTGCACGTTGCTGTCATTGTGGAACTTCTGGCC
CACCGGCATGTGCATCAGGTAGAGGTCTACGTATTCCAAACCCAGGTTGC
TAAGGCTCAGGCGGCAGGCGCGCTCCACCAATGCAGGGTCGTGGTGGATT
CCGCCT
MXO02485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9436-PA | 936 | CG9436-RA | 246..933 | 706..19 | 3440 | 100 | Minus |
| CG10863-PA | 951 | CG10863-RA | 433..476 | 534..491 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9436-RA | 1303 | CG9436-RA | 378..1065 | 706..19 | 3440 | 100 | Minus |
| CG10863-RA | 1089 | CG10863-RA | 466..537 | 534..463 | 210 | 86.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6757839..6758526 | 19..706 | 3440 | 100 | Plus |
| 3L | 28110227 | 3L | 3941683..3941754 | 463..534 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:22 has no hits.
MXO02485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:03 Download gff for
MXO02485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-PA | 246..936 | 18..706 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:20 Download gff for
MXO02485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-PA | 246..936 | 18..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:54 Download gff for
MXO02485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-RA | 378..1065 | 19..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:59 Download gff for
MXO02485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-RA | 378..1065 | 19..706 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:59 Download gff for
MXO02485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6757839..6758526 | 19..706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:54 Download gff for
MXO02485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2645344..2646031 | 19..706 | 100 | | Plus |
MXO02485.5prime Sequence
902 bp (840 high quality bases) assembled on 2006-12-21
> MXO02485.5prime
CAGTCGACATGACCAATCTGGCTCCCACCATCCGGCTGAACAACGGGCGC
GAGATGCCAACTCTGGGCCTTGGCACCTGGAAGTCGTTCGAGTCGGACGC
CTACCACTCAACGCGCCACGCCCTCGACGTGGGCTACCGGCACCTGGACA
CCGCCTTCGTCTACGAGAACGAGGCTGAGGTGGGCCAGGCGATCTCCGAG
AAGATCGCCGAGGGAGTGGTCACACGCGAGGAGGTTTTCGTGACCACCAA
GCTAGGCGGAATCCACCACGACCCTGCATTGGTGGAGCGCGCCTGCCGCC
TGAGCCTTAGCAACCTGGGTTTGGAATACGTAGACCTCTACCTGATGCAC
ATGCCGGTGGGCCAGAAGTTCCACAATGACAGCAACGTGCACGGAACCCT
GGAGCTGACGGACGTGGACTATCTGGACACCTGGCGCGAGATGGAGAAGC
TGGTGGATCTGGGCCTGACGCGCAGCATCGGCCTGTCCAACTTCAACGCC
GCGCAGACGGAGCGAGTGCTAGCCAACTGCCGCATCCGGCCGGTAGTGAA
CCAGGTGGAGTGCCACCCAGGCTTTCAGCAGCGCCAGCTCCGGGAGCATG
CCAAGCGCCACGGACTGGTCATCTGCGCCTACTGCCCCCTGGCACGTCCC
CAGCCCGCTCGGCAGTGGCCGCCCTTCCTCTACGACGAGCATGCCCAGAA
TCTGGCCAAGAAGTACGGCCGCACCACGGCACAGATCTGCCTGCGTTATC
TGGTCCAGCTAGGCGTGGTGCCACTGCCCAAGTCGTCGAACAAGGCCCGC
ATCGAGGAGAACTTCCGCGTCTTCGACTTCGAGCTGAGTCCAGACGACGT
CGCCGGCATGGAGCAGTATCACACCGGGCAGCGCACGGTACCCTTTTCGG
GA
MXO02485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9436-PA | 936 | CG9436-RA | 1..894 | 9..902 | 4470 | 100 | Plus |
| CG10863-PA | 951 | CG10863-RA | 433..476 | 426..469 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9436-RA | 1303 | CG9436-RA | 133..1026 | 9..902 | 4470 | 100 | Plus |
| CG10863-RA | 1089 | CG10863-RA | 466..537 | 426..497 | 210 | 86.1 | Plus |
| CG12766-RA | 1075 | CG12766-RA | 152..289 | 116..253 | 180 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6757878..6758771 | 902..9 | 4470 | 100 | Minus |
| 3L | 28110227 | 3L | 3941683..3941754 | 497..426 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:06 has no hits.
MXO02485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:05 Download gff for
MXO02485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-PA | 1..893 | 9..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:20 Download gff for
MXO02485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-PA | 1..893 | 9..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:01 Download gff for
MXO02485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-RA | 123..1025 | 1..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:11 Download gff for
MXO02485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9436-RA | 123..1025 | 1..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:11 Download gff for
MXO02485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6757879..6758778 | 1..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:01 Download gff for
MXO02485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2645384..2646283 | 1..901 | 99 | | Minus |
