Clone Sequence Records
MXO02486.3prime Sequence
887 bp (870 high quality bases) assembled on 2006-12-21
> MXO02486.3prime
ATGGTCTAGAAAGCTTGCGGTGCTCGGTGGTGGCTGATTGCCCGGCTGCT
GTTCATTGCCAGGATTTGCGTTCGAATTGGGAAAGCCAGTCAATTGGCTG
GTCATGTTATAGATCATTTGCACCATGTCATTGGGCAGGGTCGGGGCATT
GCCGCCGCCGAACTGCTGGCGAATGGTGTTCATGATCATTGGATTCTGAA
GCATCGACAGCAGCTGCTCCACGTCGATCTCGGCGTTGTTGAACAAATTC
CTAACCATTGGCTGGGACAGCATGTTGATTAGGTCTTCCCTTAATCGCCC
CGTTTGGGGCGGCTGGTTCCTGGCGTTTCTGGCCGCTTCCAGGTTGCTCT
TGTACACCTCGTTGTCCGGTTCCAGCTCGATGGCCTTGGCGTAGGCCTGT
TCCGCCTTCTCGAAATTGCCCATGTTGGAGTACGCCACGCCCAGGCGGCA
GTACGCCTTGCTGTAGTTGTTGTTGTACACCAGGGCGGACTTGCAATCGG
TTACGGCGCGTTCGTTCTCACCCAGCCGGATGTGGGCCGCAGCCCGATTG
CAGTAGAAGATCGGATTCTTGGGATCGAAGGCGATGGCACGATTGTACTG
CAGCAGTGCTTCATTGTACTTGTTCTCCTTCATCAGCCGGTTGCCCTCGT
TCTTGATGGATTCGGCCAGGGCCAGGGATTCCGGATTGCGTTCTGTATAC
AGCGACTGGAAGAGCTCGAACATGTCAATGTTATTGGGAACGGCGGCGGC
GGCGGCGCCGATACCAGCACTTCCGCTGGCCACCGCATCATCGTCCGGTG
CGCTCGCAGTGCTGCTGCTCTGTGTGGTGGCCTGCTCCTCACCAGCCGCA
GCCGGCGCTGCCTCACATCATCGCCCAAGTCAAAGGG
MXO02486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5094-PA | 996 | Sgt-RA | 148..993 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgt-RB | 1463 | CG5094-RB | 402..1270 | 886..19 | 4320 | 99.9 | Minus |
Sgt-RA | 1284 | CG5094-RA | 223..1091 | 886..19 | 4320 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17473712..17474580 | 886..19 | 4295 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:11 has no hits.
MXO02486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:06 Download gff for
MXO02486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-PA | 124..996 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:21 Download gff for
MXO02486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5094-PA | 124..996 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:35 Download gff for
MXO02486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 222..1091 | 19..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:42 Download gff for
MXO02486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 222..1091 | 19..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:42 Download gff for
MXO02486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17473711..17474580 | 19..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:35 Download gff for
MXO02486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17473711..17474580 | 19..887 | 99 | | Minus |
MXO02486.5prime Sequence
927 bp (859 high quality bases) assembled on 2006-12-21
> MXO02486.5prime
CAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTAGCTTCATT
GACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAGACCGAAAG
CATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTTGGGCGATG
ATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCACCACACAG
AGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCCAGCGGAAG
TGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACATTGACATGT
TCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAATCCCTGGCC
CTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAGGAGAACAA
GTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTTCGATCCCA
AGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCCGGCTGGGT
GAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTGTACAACAA
CAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTCCAACATGG
GCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCGAGCTGGAA
CCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGAAACGCCAG
GAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAATCAACATGC
TGTCCCAGCCAATGGTTAGGAATTTGTTCAACAACGCCGAGATCGACGTG
GAGCAGCTGCTGTCGATGCTTCAGAATCCAATGATCATGAACACCATTCG
CCAGCAGTTCGGCGGCGGCAATGCCCCGACCCTGCCCAATGACATGGTGC
AAATGATCTATAACATGACCAGCCAAA
MXO02486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5094-PA | 996 | Sgt-RA | 1..918 | 9..926 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sgt-RB | 1463 | CG5094-RB | 278..1195 | 9..926 | 4590 | 100 | Plus |
Sgt-RA | 1284 | CG5094-RA | 99..1016 | 9..926 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17473588..17474505 | 9..926 | 4590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:44 has no hits.
MXO02486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:08 Download gff for
MXO02486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-PA | 1..916 | 9..924 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:21 Download gff for
MXO02486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5094-PA | 1..916 | 9..924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:45 Download gff for
MXO02486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 99..1014 | 9..924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:03 Download gff for
MXO02486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sgt-RA | 99..1014 | 9..924 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:03 Download gff for
MXO02486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17473588..17474503 | 9..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:45 Download gff for
MXO02486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17473588..17474503 | 9..924 | 100 | | Plus |