Clone MXO02486 Report

Search the DGRC for MXO02486

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:86
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSgt-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02486.3prime Sequence

887 bp (870 high quality bases) assembled on 2006-12-21

> MXO02486.3prime
ATGGTCTAGAAAGCTTGCGGTGCTCGGTGGTGGCTGATTGCCCGGCTGCT
GTTCATTGCCAGGATTTGCGTTCGAATTGGGAAAGCCAGTCAATTGGCTG
GTCATGTTATAGATCATTTGCACCATGTCATTGGGCAGGGTCGGGGCATT
GCCGCCGCCGAACTGCTGGCGAATGGTGTTCATGATCATTGGATTCTGAA
GCATCGACAGCAGCTGCTCCACGTCGATCTCGGCGTTGTTGAACAAATTC
CTAACCATTGGCTGGGACAGCATGTTGATTAGGTCTTCCCTTAATCGCCC
CGTTTGGGGCGGCTGGTTCCTGGCGTTTCTGGCCGCTTCCAGGTTGCTCT
TGTACACCTCGTTGTCCGGTTCCAGCTCGATGGCCTTGGCGTAGGCCTGT
TCCGCCTTCTCGAAATTGCCCATGTTGGAGTACGCCACGCCCAGGCGGCA
GTACGCCTTGCTGTAGTTGTTGTTGTACACCAGGGCGGACTTGCAATCGG
TTACGGCGCGTTCGTTCTCACCCAGCCGGATGTGGGCCGCAGCCCGATTG
CAGTAGAAGATCGGATTCTTGGGATCGAAGGCGATGGCACGATTGTACTG
CAGCAGTGCTTCATTGTACTTGTTCTCCTTCATCAGCCGGTTGCCCTCGT
TCTTGATGGATTCGGCCAGGGCCAGGGATTCCGGATTGCGTTCTGTATAC
AGCGACTGGAAGAGCTCGAACATGTCAATGTTATTGGGAACGGCGGCGGC
GGCGGCGCCGATACCAGCACTTCCGCTGGCCACCGCATCATCGTCCGGTG
CGCTCGCAGTGCTGCTGCTCTGTGTGGTGGCCTGCTCCTCACCAGCCGCA
GCCGGCGCTGCCTCACATCATCGCCCAAGTCAAAGGG

MXO02486.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5094-PA 996 Sgt-RA 148..993 864..19 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-RB 1463 CG5094-RB 402..1270 886..19 4320 99.9 Minus
Sgt-RA 1284 CG5094-RA 223..1091 886..19 4320 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17473712..17474580 886..19 4295 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 19:46:11 has no hits.

MXO02486.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:06 Download gff for MXO02486.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-PA 124..996 18..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:21 Download gff for MXO02486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5094-PA 124..996 18..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:35 Download gff for MXO02486.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 222..1091 19..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:42 Download gff for MXO02486.3prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 222..1091 19..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:42 Download gff for MXO02486.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17473711..17474580 19..887 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:35 Download gff for MXO02486.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17473711..17474580 19..887 99   Minus

MXO02486.5prime Sequence

927 bp (859 high quality bases) assembled on 2006-12-21

> MXO02486.5prime
CAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTAGCTTCATT
GACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAGACCGAAAG
CATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTTGGGCGATG
ATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCACCACACAG
AGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCCAGCGGAAG
TGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACATTGACATGT
TCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAATCCCTGGCC
CTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAGGAGAACAA
GTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTTCGATCCCA
AGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCCGGCTGGGT
GAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTGTACAACAA
CAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTCCAACATGG
GCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCGAGCTGGAA
CCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGAAACGCCAG
GAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAATCAACATGC
TGTCCCAGCCAATGGTTAGGAATTTGTTCAACAACGCCGAGATCGACGTG
GAGCAGCTGCTGTCGATGCTTCAGAATCCAATGATCATGAACACCATTCG
CCAGCAGTTCGGCGGCGGCAATGCCCCGACCCTGCCCAATGACATGGTGC
AAATGATCTATAACATGACCAGCCAAA

MXO02486.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5094-PA 996 Sgt-RA 1..918 9..926 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt-RB 1463 CG5094-RB 278..1195 9..926 4590 100 Plus
Sgt-RA 1284 CG5094-RA 99..1016 9..926 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17473588..17474505 9..926 4590 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:39:44 has no hits.

MXO02486.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:08 Download gff for MXO02486.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-PA 1..916 9..924 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:21 Download gff for MXO02486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5094-PA 1..916 9..924 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:45 Download gff for MXO02486.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 99..1014 9..924 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:03 Download gff for MXO02486.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt-RA 99..1014 9..924 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:03 Download gff for MXO02486.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17473588..17474503 9..924 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:45 Download gff for MXO02486.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17473588..17474503 9..924 100   Plus