Clone Sequence Records
MXO02487.3prime Sequence
837 bp (811 high quality bases) assembled on 2006-12-21
> MXO02487.3prime
ATGGTCTAGAAAGCTTGCCTGATTATTTGCTCTTCGGTACCAGAAACGTG
CCCGAAAGTCGTCGGAGCAGGTGAGGAAAGCAGGACCATTGGGCGAATGC
GTAATATAGCGGACAGGTCCGTTGTGTCCAAGCGAGTTAAGGGTCAGGCG
GCAGCCGTTACGGGAGTTCCACGAGCAAAGCGAAGTGGTGGCCTCGTCGG
GGAAAAGCACGTAATCCTCTGTGTGGTTGAATACAGCCTCTGTCTGGTGC
TCCTGCTTGCCGGTGGTTCCAGCGCCCGTGTACGTCTGAATGGGACGACT
GGTACACAGCTCCCACAGATAAACCAGTGAATCCATACCGGAAGATAGGA
GGTACTTTCCATTCCGCGTAAACTCCAGTGAGCATATTGCCGCTCCGCCA
TGCGCCTCGGCAATGGTGTTGATGCACCGCCCGCTGATCCCATCCCATAT
TTTGATGTCACCATCATAGCTGCCTGTGGCGTAGAGTTTCCCCGTGGGCG
AATATTTCACGCAAGTAACTCCAGCCTTGTGCTGCTGCGAGGGAATGGCA
CTCACGAAGCATTGGGTGGTGGCCACATCGTAGACCCGCAAGACGTTATG
TTCCGTTCCGATGGCTACGTAGTCACCAGTAGGATGAAAAGACAGGCACA
GCACCGGCTCGCAGTCGGTGAACACCTTGTGGGCCTTCTTTACCGAAGGC
TTGGCAATGTCAAACAACTTAACAGTGCCATCGCGCGAGGCGGAGGCCAG
GATGTGCTCCTTGGGATGGAACTCCAGGTAAGACACTTCATCAGTGTGAT
CATAGAGCGTGCGAATCACTGGATGGCCTTGTTTGTC
MXO02487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2261-PA | 1275 | CstF-50-RA | 458..1272 | 833..19 | 4075 | 100 | Minus |
CG2261-PB | 957 | CstF-50-RB | 458..936 | 833..355 | 2395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CstF-50-RA | 1407 | CG2261-RA | 541..1355 | 833..19 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31735945..31736423 | 355..833 | 2395 | 100 | Plus |
3R | 32079331 | 3R | 31735555..31735892 | 19..356 | 1690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:45 has no hits.
MXO02487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:10 Download gff for
MXO02487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PA | 454..1275 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:21 Download gff for
MXO02487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PA | 454..1275 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:54 Download gff for
MXO02487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 537..1358 | 15..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:46 Download gff for
MXO02487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 537..1358 | 15..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:46 Download gff for
MXO02487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31735551..31735890 | 15..354 | 99 | <- | Plus |
3R | 31735945..31736425 | 355..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:54 Download gff for
MXO02487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27561273..27561612 | 15..354 | 99 | <- | Plus |
arm_3R | 27561667..27562147 | 355..837 | 99 | | Plus |
MXO02487.5prime Sequence
878 bp (867 high quality bases) assembled on 2006-12-21
> MXO02487.5prime
CAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAGTGAAGAAC
CGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTACGACGGCCT
GGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGACCAGTGCG
CTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGCAGACGCTG
AGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGCATAGACTT
GGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACATTCCTACG
AAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCGGCGCCTTC
AGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCCAGCATCAA
GATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGAAGATATCG
AGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGCTCTATGAT
CACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAGCACATCCT
GGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACATTGCCAAGC
CTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGCCGGTGCTG
TGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGAACGGAACA
TAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTTCGTGAGTG
CCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGAAATATTCG
CCCACGGGGAAACTCTACGCCACAGGCAGCTATGATGGTGACATCAAAAT
ATGGGATGGGATCAGCGGGCGGTGCATC
MXO02487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2261-PA | 1275 | CstF-50-RA | 1..870 | 9..878 | 4350 | 100 | Plus |
CG2261-PB | 957 | CstF-50-RB | 1..870 | 9..878 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CstF-50-RA | 1407 | CG2261-RA | 83..953 | 8..878 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31736011..31736881 | 878..8 | 4355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:38 has no hits.
MXO02487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:12 Download gff for
MXO02487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PB | 1..870 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:22 Download gff for
MXO02487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2261-PB | 1..870 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:25 Download gff for
MXO02487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 76..953 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:11 Download gff for
MXO02487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CstF-50-RA | 76..953 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:11 Download gff for
MXO02487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31736011..31736884 | 1..878 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:25 Download gff for
MXO02487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27561733..27562606 | 1..878 | 99 | | Minus |