Clone MXO02487 Report

Search the DGRC for MXO02487

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:87
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCstF-50-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02487.3prime Sequence

837 bp (811 high quality bases) assembled on 2006-12-21

> MXO02487.3prime
ATGGTCTAGAAAGCTTGCCTGATTATTTGCTCTTCGGTACCAGAAACGTG
CCCGAAAGTCGTCGGAGCAGGTGAGGAAAGCAGGACCATTGGGCGAATGC
GTAATATAGCGGACAGGTCCGTTGTGTCCAAGCGAGTTAAGGGTCAGGCG
GCAGCCGTTACGGGAGTTCCACGAGCAAAGCGAAGTGGTGGCCTCGTCGG
GGAAAAGCACGTAATCCTCTGTGTGGTTGAATACAGCCTCTGTCTGGTGC
TCCTGCTTGCCGGTGGTTCCAGCGCCCGTGTACGTCTGAATGGGACGACT
GGTACACAGCTCCCACAGATAAACCAGTGAATCCATACCGGAAGATAGGA
GGTACTTTCCATTCCGCGTAAACTCCAGTGAGCATATTGCCGCTCCGCCA
TGCGCCTCGGCAATGGTGTTGATGCACCGCCCGCTGATCCCATCCCATAT
TTTGATGTCACCATCATAGCTGCCTGTGGCGTAGAGTTTCCCCGTGGGCG
AATATTTCACGCAAGTAACTCCAGCCTTGTGCTGCTGCGAGGGAATGGCA
CTCACGAAGCATTGGGTGGTGGCCACATCGTAGACCCGCAAGACGTTATG
TTCCGTTCCGATGGCTACGTAGTCACCAGTAGGATGAAAAGACAGGCACA
GCACCGGCTCGCAGTCGGTGAACACCTTGTGGGCCTTCTTTACCGAAGGC
TTGGCAATGTCAAACAACTTAACAGTGCCATCGCGCGAGGCGGAGGCCAG
GATGTGCTCCTTGGGATGGAACTCCAGGTAAGACACTTCATCAGTGTGAT
CATAGAGCGTGCGAATCACTGGATGGCCTTGTTTGTC

MXO02487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2261-PA 1275 CstF-50-RA 458..1272 833..19 4075 100 Minus
CG2261-PB 957 CstF-50-RB 458..936 833..355 2395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CstF-50-RA 1407 CG2261-RA 541..1355 833..19 4075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31735945..31736423 355..833 2395 100 Plus
3R 32079331 3R 31735555..31735892 19..356 1690 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:57:45 has no hits.

MXO02487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:10 Download gff for MXO02487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PA 454..1275 15..837 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:21 Download gff for MXO02487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PA 454..1275 15..837 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:54 Download gff for MXO02487.3prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 537..1358 15..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:46 Download gff for MXO02487.3prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 537..1358 15..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:46 Download gff for MXO02487.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31735551..31735890 15..354 99 <- Plus
3R 31735945..31736425 355..837 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:54 Download gff for MXO02487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27561273..27561612 15..354 99 <- Plus
arm_3R 27561667..27562147 355..837 99   Plus

MXO02487.5prime Sequence

878 bp (867 high quality bases) assembled on 2006-12-21

> MXO02487.5prime
CAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAGTGAAGAAC
CGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTACGACGGCCT
GGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGACCAGTGCG
CTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGCAGACGCTG
AGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGCATAGACTT
GGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACATTCCTACG
AAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCGGCGCCTTC
AGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCCAGCATCAA
GATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGAAGATATCG
AGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGCTCTATGAT
CACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAGCACATCCT
GGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACATTGCCAAGC
CTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGCCGGTGCTG
TGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGAACGGAACA
TAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTTCGTGAGTG
CCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGAAATATTCG
CCCACGGGGAAACTCTACGCCACAGGCAGCTATGATGGTGACATCAAAAT
ATGGGATGGGATCAGCGGGCGGTGCATC

MXO02487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2261-PA 1275 CstF-50-RA 1..870 9..878 4350 100 Plus
CG2261-PB 957 CstF-50-RB 1..870 9..878 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CstF-50-RA 1407 CG2261-RA 83..953 8..878 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31736011..31736881 878..8 4355 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:58:38 has no hits.

MXO02487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:12 Download gff for MXO02487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PB 1..870 9..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:22 Download gff for MXO02487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2261-PB 1..870 9..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:25 Download gff for MXO02487.5prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 76..953 1..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:11 Download gff for MXO02487.5prime
Subject Subject Range Query Range Percent Splice Strand
CstF-50-RA 76..953 1..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:11 Download gff for MXO02487.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31736011..31736884 1..878 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:25 Download gff for MXO02487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27561733..27562606 1..878 99   Minus