Clone Sequence Records
MXO02488.3prime Sequence
570 bp (570 high quality bases) assembled on 2006-12-21
> MXO02488.3prime
ATGGTCTAGAAAGCTTGCGCGATTAGCGTTCTTCAATTGGTTGGACAGCC
AGTCGAGTCCCTCGTACAGCCCATCACCGCTAGTTGCACACGTCGCCTGG
ATGTACCAGTTGCGGTTTCTGAGTGAGTGCAAGCCGAGCTTGTCGGTGAT
TTCGGCCGCGTTCATTGCATTTGGCAGATCCTGTTTGTTTGCGAAGATTA
GTAAGACTGCATCCCTCAGCTCGTCCTCTGCCAGCATGCGCATCAACTCC
TCTCTCGCCTCACCGATACGCTCTCGGTCATTGCTGTCCACGACGAAGAT
AAGACCTTGTGTATTCTGGAAGTAGTGCCTCCACAGGGGACGAATTTTGT
CTTGGCCACCCACATCCCACACTGTAAAGCTAATATTCTTGTATTCTACA
GTCTCCACATTGAAACCAATGGTAGGTATCGTTGTAACAATTTCGCCTAA
TTTGAGTTTGTACAGAATTGTGGTTTTACCAGCGGCATCCAAACCGACCA
TCAATATCCTCATTTCCTTTTTGCCGAATAGGCCTTTGAATAAGTTCGCG
AATACGTTTCCCATGTCGAC
MXO02488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8385-PA | 549 | Arf79F-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
| CG8385-PD | 549 | Arf79F-RD | 1..546 | 564..19 | 2730 | 100 | Minus |
| CG8385-PB | 549 | Arf79F-RB | 1..546 | 564..19 | 2730 | 100 | Minus |
| CG8385-PE | 549 | Arf79F-RE | 1..546 | 564..19 | 2730 | 100 | Minus |
| CG8385-PC | 549 | Arf79F-RC | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf79F-RJ | 1464 | CG8385-RJ | 341..887 | 565..19 | 2735 | 100 | Minus |
| Arf79F-RI | 1459 | CG8385-RI | 336..882 | 565..19 | 2735 | 100 | Minus |
| Arf79F-RH | 1456 | CG8385-RH | 205..751 | 565..19 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22869085..22869248 | 19..182 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 22869840..22869990 | 415..565 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 22869345..22869475 | 180..310 | 640 | 99.2 | Plus |
| 3L | 28110227 | 3L | 22869664..22869775 | 306..417 | 560 | 100 | Plus |
| 4 | 1348131 | 4 | 1124441..1124667 | 492..266 | 505 | 81.5 | Minus |
| 2R | 25286936 | 2R | 15323847..15324028 | 468..287 | 235 | 75.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:09 has no hits.
MXO02488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:14 Download gff for
MXO02488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8385-PE | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:22 Download gff for
MXO02488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8385-PC | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:27 Download gff for
MXO02488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf79F-RH | 200..756 | 11..570 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:40 Download gff for
MXO02488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf79F-RH | 200..756 | 11..570 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:40 Download gff for
MXO02488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22869080..22869246 | 11..180 | 97 | <- | Plus |
| 3L | 22869346..22869471 | 181..306 | 100 | <- | Plus |
| 3L | 22869665..22869774 | 307..416 | 100 | <- | Plus |
| 3L | 22869842..22869992 | 417..570 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:27 Download gff for
MXO02488.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22862180..22862346 | 11..180 | 97 | <- | Plus |
| arm_3L | 22862446..22862571 | 181..306 | 100 | <- | Plus |
| arm_3L | 22862765..22862874 | 307..416 | 100 | <- | Plus |
| arm_3L | 22862942..22863092 | 417..570 | 98 | | Plus |
MXO02488.5prime Sequence
570 bp (570 high quality bases) assembled on 2006-12-21
> MXO02488.5prime
CAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCCTATTCGGC
AAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCTGGTAAAAC
CACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAACGATACCTA
CCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTAGCTTTACA
GTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGGAGGCACTA
CTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAATGACCGAG
AGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGGCAGAGGAC
GAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAGGATCTGCC
AAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTTGCACTCAC
TCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTAGCGGTGAT
GGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAGAACGCTAA
TCGCGCAAGCTTTCTAGACC
MXO02488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8385-PA | 549 | Arf79F-RA | 1..546 | 9..554 | 2730 | 100 | Plus |
| CG8385-PD | 549 | Arf79F-RD | 1..546 | 9..554 | 2730 | 100 | Plus |
| CG8385-PB | 549 | Arf79F-RB | 1..546 | 9..554 | 2730 | 100 | Plus |
| CG8385-PE | 549 | Arf79F-RE | 1..546 | 9..554 | 2730 | 100 | Plus |
| CG8385-PC | 549 | Arf79F-RC | 1..546 | 9..554 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf79F-RJ | 1464 | CG8385-RJ | 341..887 | 8..554 | 2735 | 100 | Plus |
| Arf79F-RI | 1459 | CG8385-RI | 336..882 | 8..554 | 2735 | 100 | Plus |
| Arf79F-RH | 1456 | CG8385-RH | 205..751 | 8..554 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22869085..22869248 | 554..391 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 22869840..22869990 | 158..8 | 755 | 100 | Minus |
| 3L | 28110227 | 3L | 22869345..22869475 | 393..263 | 640 | 99.2 | Minus |
| 3L | 28110227 | 3L | 22869664..22869775 | 267..156 | 560 | 100 | Minus |
| 4 | 1348131 | 4 | 1124441..1124667 | 81..307 | 505 | 81.5 | Plus |
| 2R | 25286936 | 2R | 15323847..15324028 | 105..286 | 235 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:45 has no hits.
MXO02488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:15 Download gff for
MXO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8385-PE | 1..549 | 9..558 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:22 Download gff for
MXO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8385-PC | 1..549 | 9..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:15 Download gff for
MXO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf79F-RH | 198..756 | 1..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:05 Download gff for
MXO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf79F-RH | 198..756 | 1..562 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:05 Download gff for
MXO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22869665..22869774 | 157..266 | 100 | <- | Minus |
| 3L | 22869842..22869994 | 1..156 | 98 | | Minus |
| 3L | 22869080..22869246 | 393..562 | 97 | <- | Minus |
| 3L | 22869346..22869471 | 267..392 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:15 Download gff for
MXO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22862180..22862346 | 393..562 | 97 | <- | Minus |
| arm_3L | 22862446..22862571 | 267..392 | 100 | <- | Minus |
| arm_3L | 22862765..22862874 | 157..266 | 100 | <- | Minus |
| arm_3L | 22862942..22863094 | 1..156 | 98 | | Minus |
