Clone MXO02489 Report

Search the DGRC for MXO02489

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:89
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptarg-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02489.3prime Sequence

906 bp (810 high quality bases) assembled on 2006-12-21

> MXO02489.3prime
ATGGTCTAGAAAGCTTGCATCGCTACCAAGGATTCCGGTATCGATGTTGC
TCCAGCGCCCCGAACGCCGGTAACCGAACATGCTCTTCAGTATCTCCAGG
CCGGACTCCACAGTGGTGCGCACGTCGCGCTCGCTGCCTAGCTTTGGGTT
GATCTCCACCAGATCGACGCCCTGCACCCGCTTGGTGTCCCGGAGTGCCT
CCACGATGCTGATTCCCTCGCGGAGCGTGAGGCCACCGCGCACCGCGGTG
CCAGTGCTAGGCGCCACATTGCTGTCCAAGGCGTCGATGTCAAAGCTGAC
GTGGATCTTGTTCTGCGGATTAAGGGCGTCCAGCGTCATCTCGATAATCT
TGGGCACGCCCACCCGGTCGATGGTATCCATTGCATAGTAGCGTATTCCG
ACTTTGTTTAGGATGAACGCCTCGTAGGGGTCAATGTCCCGGAGTCCGAT
GTAAACCAGCTGATCCTTGGGCAAGCAGTTGGGCGCGATTTCCTGGAGGC
CAGCGTGCTGCCAGGTGTTACGGAGCTGTTCCAACAGAAAGGATACAGGC
ATCCCATGGATGTTGCCCGACTGCGAGGTGCTATGCAGATTGATGTCCGC
ATGTGCGTCGATCCACACCAGGGACAAATTCGGCGTGTGTTGCAGGTGCC
CGGCCACGGATCCGAAGCCGATCGCATGATCACCACCAATGGCTAAAAAC
TGCGTGTTCTCCACGAGCATGAGTTTCACCTGTTCAATCAGTGCCCGATT
GCAGGCCATGAAGTCCGCGTAGTTTCGGATGTGGTGATAGTGCACACGCT
GCTGCTGGAGAAGGGGCTCGTCTACGGCGTACTGCAGATTTCCGTAGTCC
CGTATCACCAGGCCATCATGACTGCTCTGAAGCACCTGACGCAGACTGCT
CTGCCG

MXO02489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18104-PA 1056 arg-RA 166..1053 906..19 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 243..1130 906..19 4440 100 Minus
elav-RD 10506 CG4262-RD 9627..9832 662..867 1030 100 Plus
elav-RD 10506 CG4262-RD 9380..9567 476..663 940 100 Plus
elav-RD 10506 CG4262-RD 10025..10064 867..906 200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 527559..527915 375..19 1785 100 Minus
X 23542271 X 509909..510114 867..662 1030 100 Minus
X 23542271 X 510174..510361 663..476 940 100 Minus
X 23542271 X 526501..526601 476..376 505 100 Minus
X 23542271 X 509677..509716 906..867 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:45:26 has no hits.

MXO02489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:30:18 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:23 Download gff for MXO02489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18104-PA 166..1056 15..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:08 Download gff for MXO02489.3prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 260..1152 14..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:20 Download gff for MXO02489.3prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 243..1135 14..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:20 Download gff for MXO02489.3prime
Subject Subject Range Query Range Percent Splice Strand
X 509677..509716 867..906 100 -> Minus
X 509910..510113 663..866 100 -> Minus
X 510175..510361 476..662 100 -> Minus
X 526502..526601 376..475 100 -> Minus
X 527559..527920 14..375 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:08 Download gff for MXO02489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 403943..404146 663..866 100 -> Minus
arm_X 404208..404394 476..662 100 -> Minus
arm_X 420535..420634 376..475 100 -> Minus
arm_X 403710..403749 867..906 100 -> Minus
arm_X 421592..421953 14..375 99   Minus

MXO02489.5prime Sequence

725 bp (392 high quality bases) assembled on 2006-12-21

> MXO02489.5prime
CAATCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTCTCCGCCTC
CACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCTGAGCAATC
TCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAAGCAGGGCG
TGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGGCTGCGTCAGGTGCTT
CAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAATCTGCATTA
CGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTATCACCACA
TCCTAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGATTGAACAG
GTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATTGGTGGTGA
TCATGCCATCGGCTTCGGATCCGTGGCCGGGCACCTGCTACACACTCCGA
ATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATCTGCATAGC
ACCTCGCAGTCGGGCAACATCCATGGGATGACTGTATCCTTTCTGTTGAA
ACACCTCCGTAACACCTGGCAACACGCTGGCCTCCAAGAAATCGCGCCCA
ACTGCTTGCACAAGGATCAGCTGGTTTACATCGGACTCCGGGACATTGAC
CCCTACGAGGCGTTCATCCAAGACAAAGTCGGAATACGCTACTATGCAAT
GGATACCATCGACCGGGTGGGCGTG

MXO02489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18104-PA 1056 arg-RA 1..717 9..725 3235 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 78..794 9..725 3375 98 Plus
elav-RD 10506 CG4262-RD 10025..10229 213..9 1010 99.5 Minus
elav-RD 10506 CG4262-RD 9627..9832 418..213 985 98.5 Minus
elav-RD 10506 CG4262-RD 9380..9567 604..417 835 96.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 509512..509716 9..213 1010 99.5 Plus
X 23542271 X 509909..510114 213..418 985 98.5 Plus
X 23542271 X 510174..510361 417..604 835 96.3 Plus
X 23542271 X 526501..526601 604..704 460 97 Plus
Blast to na_te.dros performed on 2014-11-28 23:12:55 has no hits.

MXO02489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:30:19 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:23 Download gff for MXO02489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18104-PA 1..717 9..725 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:56 Download gff for MXO02489.5prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 85..811 1..725 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:26 Download gff for MXO02489.5prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 68..794 1..725 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:26 Download gff for MXO02489.5prime
Subject Subject Range Query Range Percent Splice Strand
X 509910..510113 214..417 98 -> Plus
X 510175..510361 418..604 96 -> Plus
X 526502..526601 605..704 97 -> Plus
X 527559..527579 705..725 100   Plus
X 509502..509716 1..213 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:56 Download gff for MXO02489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 403535..403749 1..213 97 -> Plus
arm_X 403943..404146 214..417 98 -> Plus
arm_X 404208..404394 418..604 96 -> Plus
arm_X 420535..420634 605..704 97 -> Plus
arm_X 421592..421612 705..725 100   Plus