MXO02489.3prime Sequence
906 bp (810 high quality bases) assembled on 2006-12-21
> MXO02489.3prime
ATGGTCTAGAAAGCTTGCATCGCTACCAAGGATTCCGGTATCGATGTTGC
TCCAGCGCCCCGAACGCCGGTAACCGAACATGCTCTTCAGTATCTCCAGG
CCGGACTCCACAGTGGTGCGCACGTCGCGCTCGCTGCCTAGCTTTGGGTT
GATCTCCACCAGATCGACGCCCTGCACCCGCTTGGTGTCCCGGAGTGCCT
CCACGATGCTGATTCCCTCGCGGAGCGTGAGGCCACCGCGCACCGCGGTG
CCAGTGCTAGGCGCCACATTGCTGTCCAAGGCGTCGATGTCAAAGCTGAC
GTGGATCTTGTTCTGCGGATTAAGGGCGTCCAGCGTCATCTCGATAATCT
TGGGCACGCCCACCCGGTCGATGGTATCCATTGCATAGTAGCGTATTCCG
ACTTTGTTTAGGATGAACGCCTCGTAGGGGTCAATGTCCCGGAGTCCGAT
GTAAACCAGCTGATCCTTGGGCAAGCAGTTGGGCGCGATTTCCTGGAGGC
CAGCGTGCTGCCAGGTGTTACGGAGCTGTTCCAACAGAAAGGATACAGGC
ATCCCATGGATGTTGCCCGACTGCGAGGTGCTATGCAGATTGATGTCCGC
ATGTGCGTCGATCCACACCAGGGACAAATTCGGCGTGTGTTGCAGGTGCC
CGGCCACGGATCCGAAGCCGATCGCATGATCACCACCAATGGCTAAAAAC
TGCGTGTTCTCCACGAGCATGAGTTTCACCTGTTCAATCAGTGCCCGATT
GCAGGCCATGAAGTCCGCGTAGTTTCGGATGTGGTGATAGTGCACACGCT
GCTGCTGGAGAAGGGGCTCGTCTACGGCGTACTGCAGATTTCCGTAGTCC
CGTATCACCAGGCCATCATGACTGCTCTGAAGCACCTGACGCAGACTGCT
CTGCCG
MXO02489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18104-PA | 1056 | arg-RA | 166..1053 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 243..1130 | 906..19 | 4440 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 662..867 | 1030 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 476..663 | 940 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 10025..10064 | 867..906 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 527559..527915 | 375..19 | 1785 | 100 | Minus |
X | 23542271 | X | 509909..510114 | 867..662 | 1030 | 100 | Minus |
X | 23542271 | X | 510174..510361 | 663..476 | 940 | 100 | Minus |
X | 23542271 | X | 526501..526601 | 476..376 | 505 | 100 | Minus |
X | 23542271 | X | 509677..509716 | 906..867 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:26 has no hits.
MXO02489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:30:18 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:23 Download gff for
MXO02489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18104-PA | 166..1056 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:08 Download gff for
MXO02489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 260..1152 | 14..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:20 Download gff for
MXO02489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 243..1135 | 14..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:20 Download gff for
MXO02489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 509677..509716 | 867..906 | 100 | -> | Minus |
X | 509910..510113 | 663..866 | 100 | -> | Minus |
X | 510175..510361 | 476..662 | 100 | -> | Minus |
X | 526502..526601 | 376..475 | 100 | -> | Minus |
X | 527559..527920 | 14..375 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:08 Download gff for
MXO02489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403943..404146 | 663..866 | 100 | -> | Minus |
arm_X | 404208..404394 | 476..662 | 100 | -> | Minus |
arm_X | 420535..420634 | 376..475 | 100 | -> | Minus |
arm_X | 403710..403749 | 867..906 | 100 | -> | Minus |
arm_X | 421592..421953 | 14..375 | 99 | | Minus |
MXO02489.5prime Sequence
725 bp (392 high quality bases) assembled on 2006-12-21
> MXO02489.5prime
CAATCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTCTCCGCCTC
CACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCTGAGCAATC
TCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAAGCAGGGCG
TGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGGCTGCGTCAGGTGCTT
CAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAATCTGCATTA
CGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTATCACCACA
TCCTAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGATTGAACAG
GTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATTGGTGGTGA
TCATGCCATCGGCTTCGGATCCGTGGCCGGGCACCTGCTACACACTCCGA
ATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATCTGCATAGC
ACCTCGCAGTCGGGCAACATCCATGGGATGACTGTATCCTTTCTGTTGAA
ACACCTCCGTAACACCTGGCAACACGCTGGCCTCCAAGAAATCGCGCCCA
ACTGCTTGCACAAGGATCAGCTGGTTTACATCGGACTCCGGGACATTGAC
CCCTACGAGGCGTTCATCCAAGACAAAGTCGGAATACGCTACTATGCAAT
GGATACCATCGACCGGGTGGGCGTG
MXO02489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18104-PA | 1056 | arg-RA | 1..717 | 9..725 | 3235 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 78..794 | 9..725 | 3375 | 98 | Plus |
elav-RD | 10506 | CG4262-RD | 10025..10229 | 213..9 | 1010 | 99.5 | Minus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 418..213 | 985 | 98.5 | Minus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 604..417 | 835 | 96.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 509512..509716 | 9..213 | 1010 | 99.5 | Plus |
X | 23542271 | X | 509909..510114 | 213..418 | 985 | 98.5 | Plus |
X | 23542271 | X | 510174..510361 | 417..604 | 835 | 96.3 | Plus |
X | 23542271 | X | 526501..526601 | 604..704 | 460 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:55 has no hits.
MXO02489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:30:19 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:23 Download gff for
MXO02489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18104-PA | 1..717 | 9..725 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:56 Download gff for
MXO02489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 85..811 | 1..725 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:26 Download gff for
MXO02489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 68..794 | 1..725 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:26 Download gff for
MXO02489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 509910..510113 | 214..417 | 98 | -> | Plus |
X | 510175..510361 | 418..604 | 96 | -> | Plus |
X | 526502..526601 | 605..704 | 97 | -> | Plus |
X | 527559..527579 | 705..725 | 100 | | Plus |
X | 509502..509716 | 1..213 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:56 Download gff for
MXO02489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403535..403749 | 1..213 | 97 | -> | Plus |
arm_X | 403943..404146 | 214..417 | 98 | -> | Plus |
arm_X | 404208..404394 | 418..604 | 96 | -> | Plus |
arm_X | 420535..420634 | 605..704 | 97 | -> | Plus |
arm_X | 421592..421612 | 705..725 | 100 | | Plus |