Clone MXO02490 Report

Search the DGRC for MXO02490

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:90
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSod2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02490.5prime Sequence

675 bp (675 high quality bases) assembled on 2006-12-21

> MXO02490.5prime
CAGTCGACATGTTCGTGGCCCGTAAAATTTCGCAAACTGCAAGCCTGGCG
GTGCGTGGCAAGCACACCCTACCGAAGCTGCCCTACGACTATGCCGCCCT
GGAGCCTATCATCTGCCGGGAGATCATGGAGCTGCATCACCAGAAGCACC
ACCAGACCTACGTCAACAATCTAAATGCCGCCGAGGAGCAGCTGGAGGAG
GCCAAGTCGAAGAGCGACACCACCAAGCTGATTCAGCTGGCTCCTGCCCT
GCGTTTCAATGGCGGTGGCCACATCAACCACACCATCTTCTGGCAGAACC
TCTCGCCCAACAAGACCCAGCCCAGCGATGATCTGAAGAAGGCCATCGAG
TCGCAGTGGAAGAGCCTCGAGGAGTTCAAAAAGGAGCTGACCACGCTGAC
CGTGGCGGTCCAGGGCTCCGGCTGGGGCTGGCTGGGCTTCAACAAGAAGT
CGGGCAAACTGCAACTGGCCGCCCTGCCCAACCAGGATCCCCTGGAGGCC
TCCACCGGCCTGATCCCGCTCTTCGGCATCGATGTCTGGGAGCACGCCTA
CTATCTGCAGTACAAGAACGTGCGTCCCTCCTACGTGGAGGCCATCTGGG
ACATCGCCAACTGGGATGACATCTCGTGCCGCTTCCAGGAGGCCAAGAAG
CTCGGTTGCGCAAGCTTTCTAGACC

MXO02490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8905-PA 654 Sod2-RA 1..651 9..659 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Sod2-RB 1015 CG8905-RB 127..777 9..659 3255 100 Plus
Sod2-RA 884 CG8905-RA 127..777 9..659 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16773023..16773640 659..42 3090 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:57:35 has no hits.

MXO02490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:22 Download gff for MXO02490.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod2-PA 1..654 9..663 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:24 Download gff for MXO02490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8905-PA 1..654 9..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:47 Download gff for MXO02490.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod2-RA 120..782 1..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:39 Download gff for MXO02490.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod2-RA 120..782 1..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:39 Download gff for MXO02490.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16773018..16773638 44..665 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:47 Download gff for MXO02490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12660523..12661143 44..665 99 <- Minus

MXO02490.3prime Sequence

675 bp (675 high quality bases) assembled on 2006-12-21

> MXO02490.3prime
ATGGTCTAGAAAGCTTGCGCAACCGAGCTTCTTGGCCTCCTGGAAGCGGC
ACGAGATGTCATCCCAGTTGGCGATGTCCCAGATGGCCTCCACGTAGGAG
GGACGCACGTTCTTGTACTGCAGATAGTAGGCGTGCTCCCAGACATCGAT
GCCGAAGAGCGGGATCAGGCCGGTGGAGGCCTCCAGGGGATCCTGGTTGG
GCAGGGCGGCCAGTTGCAGTTTGCCCGACTTCTTGTTGAAGCCCAGCCAG
CCCCAGCCGGAGCCCTGGACCGCCACGGTCAGCGTGGTCAGCTCCTTTTT
GAACTCCTCGAGGCTCTTCCACTGCGACTCGATGGCCTTCTTCAGATCAT
CGCTGGGCTGGGTCTTGTTGGGCGAGAGGTTCTGCCAGAAGATGGTGTGG
TTGATGTGGCCACCGCCATTGAAACGCAGGGCAGGAGCCAGCTGAATCAG
CTTGGTGGTGTCGCTCTTCGACTTGGCCTCCTCCAGCTGCTCCTCGGCGG
CATTTAGATTGTTGACGTAGGTCTGGTGGTGCTTCTGGTGATGCAGCTCC
ATGATCTCCCGGCAGATGATAGGCTCCAGGGCGGCATAGTCGTAGGGCAG
CTTCGGTAGGGTGTGCTTGCCACGCACCGCCAGGCTTGCAGTTTGCGAAA
TTTTACGGGCCACGAACATGTCGAC

MXO02490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8905-PA 654 Sod2-RA 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sod2-RB 1015 CG8905-RB 127..777 669..19 3255 100 Minus
Sod2-RA 884 CG8905-RA 127..777 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16773023..16773640 19..636 3090 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:52:43 has no hits.

MXO02490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:20 Download gff for MXO02490.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod2-PA 1..654 15..669 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:24 Download gff for MXO02490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8905-PA 1..654 15..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:50 Download gff for MXO02490.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod2-RA 121..782 13..675 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:30 Download gff for MXO02490.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod2-RA 121..782 13..675 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:30 Download gff for MXO02490.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16773018..16773638 13..634 99 <- Plus
2R 16773755..16773795 635..675 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:50 Download gff for MXO02490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12660523..12661143 13..634 99 <- Plus
arm_2R 12661260..12661300 635..675 92   Plus