Clone Sequence Records
MXO02491.3prime Sequence
804 bp (761 high quality bases) assembled on 2006-12-21
> MXO02491.3prime
ATGGTCTAGAAAGCTTGCCCAGACAACTGCGCCGTCGGAGATCTTTTTGT
GGAAGTCGTAGAGACTGGGGAAGACATGATCTCGATCGATGTCCTCGCCG
TATTTCTTGACCAGATATGCGTAGCTCTTCTCGTGCACCAGCGCCGAGTG
CCAGCCCAGTTCCTTGGCGGCCAGATAATCAGTGGTGGGACCATCCCCAA
TGTGAAGGCACTCCTCCGGCTTGAGGTTCTTCAGACCCGACTTCTCCATT
GCCTTTTGAAAGATTTGGGGGTCGGGCTTCTCGGCCTGCACCTCGTACGA
GTTAATTGCAAAGTCCAGGTACTGATCCAGCTTGGTGTTCTGCAGCAGAG
TCGGCAGCCGAGGATCGAAGTTGGCTATCACACCCAGCTTGCACTTCTCC
GGCTTCAACTCCTTGCGGAGCTGCTGAAGGAGTTCCACGCTGCCGTTGCA
TGGCTGCCAGCAAATGGAGGTTTTGTATAGCTCAATTAGGTGGTTGGAGA
AGTTGTGCAGCTTCTCGTCGGGAATGGCCGCTCCACTCTCCGCAAAAGTT
CCTGCTATCAGCTTACGCCACCATTGCTGCCATTCCATCTGGGGATTCGT
GTCGCGCCCAAAGTTGGGATAATCGCGGTTCATCTTGTACCAGTTGGCCT
TGAAGTTCTTGGCCAGCTCGTTGTTGTCGCATCGGGCTCCGAACAGGGCT
CCAATCTCGCCGTACTGCTTGCCGGGAGTGGTTCGGAATTGGAGCAGAGT
GTTGGTCACATCGAAGGTTATGAGGCGAAAGCGGCTGAGGCTGCGCATGT
CGAC
MXO02491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3200-PA | 783 | Reg-2-RA | 1..780 | 798..19 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..849 | 798..19 | 3900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605199..605735 | 19..555 | 2685 | 100 | Plus |
3L | 28110227 | 3L | 606340..606500 | 638..798 | 805 | 100 | Plus |
3L | 28110227 | 3L | 606196..606286 | 551..641 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:28:50 has no hits.
MXO02491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:23 Download gff for
MXO02491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-PA | 1..783 | 16..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:24 Download gff for
MXO02491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3200-PA | 1..783 | 16..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:12 Download gff for
MXO02491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 64..849 | 19..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:01 Download gff for
MXO02491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 64..849 | 19..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:01 Download gff for
MXO02491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 606343..606505 | 641..804 | 98 | | Plus |
3L | 605199..605731 | 19..551 | 100 | <- | Plus |
3L | 606197..606285 | 552..640 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:12 Download gff for
MXO02491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 606343..606505 | 641..804 | 98 | | Plus |
arm_3L | 605199..605731 | 19..551 | 100 | <- | Plus |
arm_3L | 606197..606285 | 552..640 | 100 | <- | Plus |
MXO02491.5prime Sequence
804 bp (804 high quality bases) assembled on 2006-12-21
> MXO02491.5prime
CAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCTTCGATGTG
ACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAGTACGGCGA
GATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCTGGCCAAGA
ACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCAACTTTGGG
CGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGTAAGCTGAT
AGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGAGAAGCTGC
ACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCATTTGCTGG
CAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGCAAGGAGTT
GAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGATCCTCGGC
TGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGGACTTTGCA
ATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAAATCTTTCA
AAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGAGGAGTGCC
TTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCAAGGAACTG
GGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATATCTGGTCAA
GAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAGTCTCTACG
ACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGGCAAGCTTTCTA
GACC
MXO02491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3200-PA | 783 | Reg-2-RA | 1..780 | 9..788 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..849 | 9..788 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605199..605735 | 788..252 | 2685 | 100 | Minus |
3L | 28110227 | 3L | 606340..606500 | 169..9 | 805 | 100 | Minus |
3L | 28110227 | 3L | 606196..606286 | 256..166 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:13 has no hits.
MXO02491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:25 Download gff for
MXO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-PA | 1..783 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:25 Download gff for
MXO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3200-PA | 1..783 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:26 Download gff for
MXO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 62..849 | 1..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:55 Download gff for
MXO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 62..849 | 1..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:55 Download gff for
MXO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 605199..605731 | 256..788 | 100 | <- | Minus |
3L | 606197..606285 | 167..255 | 100 | <- | Minus |
3L | 606343..606508 | 1..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:26 Download gff for
MXO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 605199..605731 | 256..788 | 100 | <- | Minus |
arm_3L | 606197..606285 | 167..255 | 100 | <- | Minus |
arm_3L | 606343..606508 | 1..166 | 98 | | Minus |