Clone MXO02491 Report

Search the DGRC for MXO02491

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:91
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptReg-2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02491.3prime Sequence

804 bp (761 high quality bases) assembled on 2006-12-21

> MXO02491.3prime
ATGGTCTAGAAAGCTTGCCCAGACAACTGCGCCGTCGGAGATCTTTTTGT
GGAAGTCGTAGAGACTGGGGAAGACATGATCTCGATCGATGTCCTCGCCG
TATTTCTTGACCAGATATGCGTAGCTCTTCTCGTGCACCAGCGCCGAGTG
CCAGCCCAGTTCCTTGGCGGCCAGATAATCAGTGGTGGGACCATCCCCAA
TGTGAAGGCACTCCTCCGGCTTGAGGTTCTTCAGACCCGACTTCTCCATT
GCCTTTTGAAAGATTTGGGGGTCGGGCTTCTCGGCCTGCACCTCGTACGA
GTTAATTGCAAAGTCCAGGTACTGATCCAGCTTGGTGTTCTGCAGCAGAG
TCGGCAGCCGAGGATCGAAGTTGGCTATCACACCCAGCTTGCACTTCTCC
GGCTTCAACTCCTTGCGGAGCTGCTGAAGGAGTTCCACGCTGCCGTTGCA
TGGCTGCCAGCAAATGGAGGTTTTGTATAGCTCAATTAGGTGGTTGGAGA
AGTTGTGCAGCTTCTCGTCGGGAATGGCCGCTCCACTCTCCGCAAAAGTT
CCTGCTATCAGCTTACGCCACCATTGCTGCCATTCCATCTGGGGATTCGT
GTCGCGCCCAAAGTTGGGATAATCGCGGTTCATCTTGTACCAGTTGGCCT
TGAAGTTCTTGGCCAGCTCGTTGTTGTCGCATCGGGCTCCGAACAGGGCT
CCAATCTCGCCGTACTGCTTGCCGGGAGTGGTTCGGAATTGGAGCAGAGT
GTTGGTCACATCGAAGGTTATGAGGCGAAAGCGGCTGAGGCTGCGCATGT
CGAC

MXO02491.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3200-PA 783 Reg-2-RA 1..780 798..19 3900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..849 798..19 3900 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605199..605735 19..555 2685 100 Plus
3L 28110227 3L 606340..606500 638..798 805 100 Plus
3L 28110227 3L 606196..606286 551..641 455 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:28:50 has no hits.

MXO02491.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:23 Download gff for MXO02491.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-PA 1..783 16..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:24 Download gff for MXO02491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3200-PA 1..783 16..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:12 Download gff for MXO02491.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 64..849 19..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:01 Download gff for MXO02491.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 64..849 19..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:01 Download gff for MXO02491.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 606343..606505 641..804 98   Plus
3L 605199..605731 19..551 100 <- Plus
3L 606197..606285 552..640 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:12 Download gff for MXO02491.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 606343..606505 641..804 98   Plus
arm_3L 605199..605731 19..551 100 <- Plus
arm_3L 606197..606285 552..640 100 <- Plus

MXO02491.5prime Sequence

804 bp (804 high quality bases) assembled on 2006-12-21

> MXO02491.5prime
CAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCTTCGATGTG
ACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAGTACGGCGA
GATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCTGGCCAAGA
ACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCAACTTTGGG
CGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGTAAGCTGAT
AGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGAGAAGCTGC
ACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCATTTGCTGG
CAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGCAAGGAGTT
GAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGATCCTCGGC
TGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGGACTTTGCA
ATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAAATCTTTCA
AAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGAGGAGTGCC
TTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCAAGGAACTG
GGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATATCTGGTCAA
GAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAGTCTCTACG
ACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGGCAAGCTTTCTA
GACC

MXO02491.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3200-PA 783 Reg-2-RA 1..780 9..788 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..849 9..788 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605199..605735 788..252 2685 100 Minus
3L 28110227 3L 606340..606500 169..9 805 100 Minus
3L 28110227 3L 606196..606286 256..166 455 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:05:13 has no hits.

MXO02491.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:25 Download gff for MXO02491.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-PA 1..783 9..791 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:25 Download gff for MXO02491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3200-PA 1..783 9..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:26 Download gff for MXO02491.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 62..849 1..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:55 Download gff for MXO02491.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 62..849 1..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:55 Download gff for MXO02491.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 605199..605731 256..788 100 <- Minus
3L 606197..606285 167..255 100 <- Minus
3L 606343..606508 1..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:26 Download gff for MXO02491.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 605199..605731 256..788 100 <- Minus
arm_3L 606197..606285 167..255 100 <- Minus
arm_3L 606343..606508 1..166 98   Minus