Clone MXO02492 Report

Search the DGRC for MXO02492

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:92
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5707-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02492.3prime Sequence

843 bp (740 high quality bases) assembled on 2006-12-21

> MXO02492.3prime
ATGGTCTAGAAAGCTTGCTAGGTTGCTTTTTCTCTTCCTCCGCTTGACAT
TCTCTGAATCCTCCACGGCCAACTTGAATTCCTTGACGACCTCGGGCAGC
GTCTCATCCGTCCCGTCCACCGTCCAGTTCTCCAGATGCGGTGGGCGGTG
GTGCAGAATGAAGGGATTAATGACGGCCGCCACACCCTGCGCATTGTTGA
GGTGAACGTGGTGGGTGCCCTGCACTTCGTGGAGCTCGAAGTGCGGGTTG
TTCTCCCTGAGGATGCCAATCACCTCGTCGCTCTGCTCGTCTATGTAGTT
CGACTCGGAGCCCTTGATCACGCAGTAGGGCACATTCTTGATGGTCCTGG
CCAGTTCAGCGGCGAAGGGAGGACTCGTATGGAACTCCGTGTAGTACTTG
CAGCGACCGTCGCGCGAGAAGAAGAACTTGGCCGGGAACTTGGTGGAACG
GCTGATGTTGCGCTCCAGGATGTGGCGGCAGTTCTCCAGCTCCACCGAGT
AGTCGGTGCCTTTGTACAGGACCTGCTCCATCTCTGTGTAGGTATAGGCC
GGCGGCTCCTGGCGCTTGGAATTCGCAAATCGCTCGTCCTCCACAATGTA
GCCCTCGATGTTCTTGCGCAGATAGTCGATCTGCGAGGGGGGCTTCCTAT
AGCGGGTCTTCACTATATCTATGCTGACCAACATGTCGGTGCGATGTGGG
TACAGCGAAGCGAATACGAAGCACAGCATGGCGCTCATTGAGTGGGCCAT
CAGGGACACCTTCTGCCAGCGGTACTCCTCCATTACGCGCANGATCACGC
ACAGGTAGTCCACGAAGTGGTAGGCAATCCCCTCGGGCAGCTT

MXO02492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-PA 1074 CG5707-RA 247..1071 843..19 4106 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-RC 1714 CG5707-RC 659..1483 843..19 4114 99.9 Minus
CG5707-RB 1477 CG5707-RB 422..1246 843..19 4114 99.9 Minus
CG5707-RA 1533 CG5707-RA 478..1302 843..19 4114 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2189391..2190215 19..843 4114 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 21:29:00 has no hits.

MXO02492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:27 Download gff for MXO02492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-PA 247..1074 18..843 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:25 Download gff for MXO02492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-PA 247..1074 18..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:19 Download gff for MXO02492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 478..1310 8..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:06 Download gff for MXO02492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 478..1310 8..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:06 Download gff for MXO02492.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2189383..2190215 8..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:19 Download gff for MXO02492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2189383..2190215 8..843 99   Plus

MXO02492.5prime Sequence

795 bp (719 high quality bases) assembled on 2006-12-21

> MXO02492.5prime
CAGTCGACATGACATCGAATTCCGAAGGTCGAGGCAACCCCATCGAGACG
CATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGTGGGGTTATGT
GGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATCCTGGCGCTGC
ATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCTGCCCCTGCTA
CCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCCACGGATACTC
CTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGACTACCTGTGCG
TGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGTGTCCCTGATG
GCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTTCGCTGTACCC
ACATCGCACCGACATGTTGGTCAGCATAGATATAGTGAAGACCCGCTATA
GGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAACATCGAGGGCTAC
ATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCCAGGAGCCGCCGGC
CTATACCTACACAGAGATGGAGCAGGTCCTGTACAAAGGCACCGACTACT
CGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCGCAACATCAGCCGT
TCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCGACGGTCGCTGCAA
GTACTACACGGAGTTCCATACGAGTCCTCCCTTCACCGCTGAACTGGCCA
GGACCATCAAGAATGTGCCCTACTGCGTGATCAAGGGCTCCGAGT

MXO02492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-PA 1074 CG5707-RA 1..787 9..795 3910 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-RA 1533 CG5707-RA 232..1018 9..795 3920 99.9 Plus
CG5707-RC 1714 CG5707-RC 464..1199 60..795 3665 99.9 Plus
CG5707-RB 1477 CG5707-RB 227..962 60..795 3665 99.9 Plus
CG5707-RC 1714 CG5707-RC 232..282 9..59 255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2189675..2190413 795..57 3680 99.9 Minus
3L 28110227 3L 2191939..2191990 60..9 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:01:41 has no hits.

MXO02492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:28 Download gff for MXO02492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-PA 1..787 9..795 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:26 Download gff for MXO02492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-PA 1..787 9..795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:19 Download gff for MXO02492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 232..1018 9..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:39 Download gff for MXO02492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 232..1018 9..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:39 Download gff for MXO02492.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2189675..2190410 60..795 99 <- Minus
3L 2191940..2191990 9..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:19 Download gff for MXO02492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2189675..2190410 60..795 99 <- Minus
arm_3L 2191940..2191990 9..59 100   Minus