Clone MXO02494 Report

Search the DGRC for MXO02494

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:94
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptGclm-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02494.3prime Sequence

882 bp (777 high quality bases) assembled on 2006-12-21

> MXO02494.3prime
ATGGTCTAGAAAGCTTGCAACGCTCGACCTCGACGCGCCCACGATGTAGC
CCTTGGCGGTGAGAACGCCCCGGCAGCGGACATGCACCTGGTAACGCAGT
GTCCAGTCGATTGTGTAGCCAGGGACCAGTCCGTCGAACTGCTCCACGGG
CAGCAGGAGCTCGGGATCGCTGTGCGTGTTCAGTTGGATGTCGTGAGCGG
TGCAGAACTCCTGCAGTTCTGGTGGCACCACGCAGCACGTAGACAGGTTG
ACCTGGGCAATTGTGGGCACAACCTGTGCGCTGTTGTGTAGCTCCTCCAG
CGCCGCCGCATCCAGATCGGCAATTCCCAGCTGTGTAATCTGCTGCTTGA
GGGCATATTGCTCCAGTGTTTTGTACAGTTCCTTCAGCTCTGCCACTCCT
TCCTTTCCATTGCGCTGGCTCCAGTTTGTAGCCCTGCTGACGTTGGAATC
CTCGGAACAGGGCGGTTTGGTTGTGGCCACCGGCGTTGCGGTGGCAACCG
CATTCGGGTGGTAGGCCAACACCACATTGTCCACGTGCGTCACACTAAGT
ATGTGGAGCAGCTCCTCCACCGCCTGATTCACAGACTCTGTGGAGTGGCG
ATTGAGGAATATCTTGGCACCGATACTTATCTCATTCCGTCCATTCTCCG
TCAAGCGGGTGGTCAACTCCTGGGTGGCCCTTTGCACCCGCCCATGCAGC
TCGTCGATCTCCTTTTCAACCACCACGCGCTCCGCAGTCGAGTCGGTGTG
GAGCGTTATCTTCAGGCCGTCGTACAGCTCCTCGTTCGATTTGCGCTGTC
CCAGTTCCGTGGCGATGATGTTGCCCGTGCTAATCACCACGTTCTGGTAC
TTCTTCGTTATGGTCGGTATCATGTCGACTGA

MXO02494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4919-PA 858 Gclm-RA 1..855 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Gclm-RB 1505 CG4919-RB 160..1015 874..19 4280 100 Minus
Gclm-RA 1211 CG4919-RA 160..1015 874..19 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22685496..22686351 19..874 4280 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:02 has no hits.

MXO02494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:32 Download gff for MXO02494.3prime
Subject Subject Range Query Range Percent Splice Strand
Gclm-PA 1..858 18..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:27 Download gff for MXO02494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4919-PA 1..858 18..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:16 Download gff for MXO02494.3prime
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 152..1021 10..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:15 Download gff for MXO02494.3prime
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 152..1021 10..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:15 Download gff for MXO02494.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22685489..22686354 10..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:16 Download gff for MXO02494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18511211..18512076 10..881 99   Plus

MXO02494.5prime Sequence

784 bp (733 high quality bases) assembled on 2006-12-21

> MXO02494.5prime
CAGTCGACATGATACCGACCATAACGAAGAAGTACCAGAACGTGGTGATT
AGCACGGGCAACATCATCGCCACGGAACTGGGACAGCGCAAATCGAACGA
GGAGCTGTACGACGGCCTGAAGATAACGCTCCACACCGACTCGACTGCGG
AGCGCGTGGTGGTTGAAAAGGAGATCGACGAGCTGCATGGGCGGGTGCAA
AGGGCCACCCAGGAGTTGACCACCCGCTTGACGGAGAATGGACGGAATGA
GATAAGTATCGGTGCCAAGATATTCCTCAATCGCCACTCCACAGAGTCTG
TGAATCAGGCGGTGGAGGAGCTGCTCCACATACTTAGTGTGACGCACGTG
GACAATGTGGTGTTGGCCTACCACCCGAATGCGGTTGCCACCGCAACGCC
GGTGGCCACAACCAAACCGCCCTGTTCCGAGGATTCCAACGTCAGCAGGG
CTACAAACTGGAGCCAGCGCAATGGAAAGGAAGGAGTGGCAGAGCTGAAG
GAACTGTACAAAACACTGGAGCAATATGCCCTCAAGCAGCAGATTACACA
GCTGGGAATTGCCGATCTGGATGCGGCGGCGCTGGAGGAGCTACACAACA
GCGCACAGGTTGTGCCCACAATTGCCCAGGTCAACCTGTCTACGTGCTGC
GTGGTGCCACCAGAACTGCAGGAGTTCTGCACCGCTCACGACATCCAACT
GAACACGCACAGCGATCCCGAGCTCCTGCTGCCCGTGGAGCAGTTCGACG
GACTGGTCCCTGGCTACACAATCGACTGGACACT

MXO02494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4919-PA 858 Gclm-RA 1..776 9..784 3880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Gclm-RB 1505 CG4919-RB 160..936 8..784 3885 100 Plus
Gclm-RA 1211 CG4919-RA 160..936 8..784 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22685575..22686351 784..8 3885 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:04:52 has no hits.

MXO02494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:33 Download gff for MXO02494.5prime
Subject Subject Range Query Range Percent Splice Strand
Gclm-PA 1..776 9..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:27 Download gff for MXO02494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4919-PA 1..776 9..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:20 Download gff for MXO02494.5prime
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 152..936 1..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:08 Download gff for MXO02494.5prime
Subject Subject Range Query Range Percent Splice Strand
Gclm-RA 152..936 1..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:08 Download gff for MXO02494.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22685575..22686354 1..784 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:20 Download gff for MXO02494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18511297..18512076 1..784 99   Minus