Clone MXO02495 Report

Search the DGRC for MXO02495

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:24
Well:95
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4390-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02495.3prime Sequence

882 bp (777 high quality bases) assembled on 2006-12-21

> MXO02495.3prime
ATGGTCTAGAAAGCTTGCAGCGGAAGCTGTGAGCAGGGCGGCATGGTAGG
CGATGTGTTCGGCGACGAACGTGGCGATGTAGAAGTAGCTGTGATCGTAT
CCCTCGCGCTGCTTGAAGATGGTCTGGATGTGATCATTGCCATCTGCGGC
AGCCAGCAGGTTCTCCGGCAGCAGCTGCTTGCCGGCCAGGAAGTTGTCTG
CTGCACCTTGGTCGATGAAGAGCTCCTGCGGAGTGCTCTCGTACTGCGAC
ACCAGATGCGTGGCATCCCACAGGGCCCAGTCATCCGGATTGGAGCCCAG
ATAGCCGGCAAAGGCCTTCTTGCCCCACGGGCACTCGGTGGGATTGGCAA
TCGGCGCAAAAGCGGACACCGACTGGTACAGCCCGGGATTCTTAAGCGCG
CAGATCAGGGCTCCGTGGCCGCCCATACTGTGGCCGAATATACCGCGTTT
ACCGGGAACCACGGGCAGATTGGCATTGACCACATCCACCAGCTCCTGGG
TCACATAGCTGTACATCTTGTAGTGCTTCGACCACGGCTCCTCCTTTGCA
TCCACATAGAATCCAGCCCCGCTTCCAAAGTCGTATGCATCATCTTGGCC
GGCAATTTCCACGCCCCTGGGCGAAGTGTCCGGATTGACGACGATCAGGT
TGTGGCGGGCGGCGTGCTGCTGGAATCCGCTCTTCTGGATGAAGTTCTCA
TGCGTGCAGGTCAGTCCGCTGAGGAAGAACAGCACCGGACACGGTTTACC
CTCCAAAGCGGCCGGCGGCAGGAAGACGCCAAAGGTCATGTCGCACTTCA
AGGTGTCCGAGCGATGGCGATACACGCGTTGCTCGCCCTCGAAGCACTTA
TTTGCGGACAGCTGTTCGAGCGTCATGTCGAC

MXO02495.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-PB 993 CG4390-RB 131..990 878..19 4300 100 Minus
CG4390-PA 861 CG4390-RA 1..858 876..19 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-RA 1006 CG4390-RA 51..910 878..19 4300 100 Minus
CG4390-RB 1141 CG4390-RB 186..1045 878..19 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20056514..20057373 19..878 4300 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:05 has no hits.

MXO02495.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:35 Download gff for MXO02495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 127..993 16..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:28 Download gff for MXO02495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 127..993 16..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:18 Download gff for MXO02495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 197..1060 19..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:17 Download gff for MXO02495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 182..1045 19..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:17 Download gff for MXO02495.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20056514..20057375 19..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:18 Download gff for MXO02495.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15882236..15883097 19..882 99   Plus

MXO02495.5prime Sequence

820 bp (738 high quality bases) assembled on 2006-12-21

> MXO02495.5prime
CAGTCGACATGACGCTCGAACAGCTGTCCGCAAATAAGTGCTTCGAGGGC
GAGCAACGCGTGTATCGCCATCGCTCGGACACCTTGAAGTGCGACATGAC
CTTTGGCGTCTTCCTGCCGCCGGCCGCTTTGGAGGGTAAACCGTGTCCGG
TGCTGTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACTTCATCCAG
AAGAGCGGATTCCAGCAGCACGCCGCCCGCCACAACCTGATCGTCGTCAA
TCCGGACACTTCGCCCAGGGGCGTGGAAATTGCCGGCCAAGATGATGCAT
ACGACTTTGGAAGCGGGGCTGGATTCTATGTGGATGCAAAGGAGGAGCCG
TGGTCGAAGCACTACAAGATGTACAGCTATGTGACCCAGGAGCTGGTGGA
TGTGGTCAATGCCAATCTGCCCGTGGTTCCCGGTAAACGCGGTATATTCG
GCCACAGTATGGGCGGCCACGGAGCCCTGATCTGCGCGCTTAAGAATCCC
GGGCTGTACCAGTCGGTGTCCGCTTTTGCGCCGATTGCCAATCCCACCGA
GTGCCCGTGGGGCAAGAAGGCCTTTGCCGGCTATCTGGGCTCCAATCCGG
ATGACTGGGCCCTGTGGGATGCCACGCATCTGGTGTCGCAGTACGAGAGC
ACTCCGCAGGAGCTCTTCATCGACCAAGGTGCAGCAGACAACTTCCTGGC
CGGCAAGCAGCTGCTGCCGGAGAACCTGCTGGCTGCCGCAGATGGCAATG
ATCACATCCAGACCATCTTTCAGCAGCGCGAGGGATACGATCACAGCTAC
TTCTACATCGCCCACGTCGT

MXO02495.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-PB 993 CG4390-RB 131..936 7..812 3980 99.7 Plus
CG4390-PA 861 CG4390-RA 1..804 9..812 3970 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-RA 1006 CG4390-RA 51..856 7..812 4000 99.8 Plus
CG4390-RB 1141 CG4390-RB 186..991 7..812 4000 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20056568..20057373 812..7 4000 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 19:10:47 has no hits.

MXO02495.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:30:37 Download gff for MXO02495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 125..944 1..820 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:28 Download gff for MXO02495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 125..944 1..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:06 Download gff for MXO02495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 195..1014 1..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:07 Download gff for MXO02495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 180..999 1..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:07 Download gff for MXO02495.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20056560..20057377 1..820 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:06 Download gff for MXO02495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15882282..15883099 1..820 99   Minus