MXO02501.5prime Sequence
666 bp (666 high quality bases) assembled on 2007-04-13
> MXO02501.5prime
CAGTCGACATGGCGAGATCAGGGCGCAGTTCGAGGTTTCTTATCGGCGGC
AGCACTTGCTGTTCGATGCTTCTGGGTCTTATCTGTCTGGCTCTGGCGGA
CTCATCCCAAGTGAAAGAACGCAGCCCTACCATCTTGGTGAGAAATACAA
TTCAAGCGGTGGAGAGGCTCTTCAATCAGGTGCTCTACACGACCATCGAA
GATGCCCGCCAACGACTACCGGGTCTTCCGGCCAACGAAACCATCGATCG
GCAGTACTTCGAGGAGCTCGACCTGGTTGCTGGGAACGAGGACTATTACA
GCACTGCATTCTATATCTTCGCCTGGATAAACAGCGACCTCATGTACCAT
AAGACTCCCGATAAGTTGCTCGTCGAGGTTCTTCCCGGCGAGAAGATCGC
CATCCGCAGATTCTTCGCCAAGGTCAAGCCGCATCTTACCAAGTATCTGC
GACTCAGTCGACAGGACAGGTCGGAATTGGTTTCCAACGTCACCCAGTTG
GCCACCGAAACCAAGGACAGTCTGATCACAACCTTCTTGGAGTTTCCCCA
GAACCTGAAGAGCCAACTTCCTGAGCTCCAGCTAATGGACTACACCAAAT
TGGCTCAGGCTTTGGTGCAGGGGGTGGCCAGTGGTATATGGACGAAGGCT
GNCAGCTTTCTAGACC
MXO02501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10149-PA | 1320 | Rpn6-RA | 52..947 | 9..904 | 4405 | 99.6 | Plus |
| CG10149-PB | 1269 | Rpn6-RB | 1..896 | 9..904 | 4405 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..673 | 8..650 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966950..19967511 | 650..89 | 2810 | 100 | Minus |
| 2L | 23513712 | 2L | 19967573..19967655 | 90..8 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:17 has no hits.
MXO02501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:29 Download gff for
MXO02501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10149-PB | 1..896 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:30 Download gff for
MXO02501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 23..680 | 1..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:59 Download gff for
MXO02501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 23..680 | 1..658 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:59 Download gff for
MXO02501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966943..19967510 | 90..658 | 99 | <- | Minus |
| 2L | 19967574..19967663 | 1..89 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:30 Download gff for
MXO02501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966943..19967510 | 90..658 | 99 | <- | Minus |
| arm_2L | 19967574..19967663 | 1..89 | 96 | | Minus |
