MXO02502.5prime Sequence
756 bp (756 high quality bases) assembled on 2007-04-13
> MXO02502.5prime
CAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGCAGAATGCT
GAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGGTCACATGG
TCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGAGGAGGAGT
TGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACGACCTGGCC
ATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTGGAGAACGA
TCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAGCTTCAACA
CCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGCCATCGGAT
CTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATTCGTCCCAT
GTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACTGCTCCTGG
ACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATTTGCTTTTG
TGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGTGGAGTGGT
CATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGACGAAGGACT
CTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAAAGGAGCTG
CTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAGGATGCCAT
GGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGGCAAGCTTTC
TAGACC
MXO02502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1836-PA | 1245 | Rad23-RA | 1..376 | 9..384 | 1880 | 100 | Plus |
| CG1836-PA | 1245 | Rad23-RA | 383..616 | 391..624 | 1170 | 100 | Plus |
| CG1836-PB | 1032 | Rad23-RB | 170..403 | 391..624 | 1170 | 100 | Plus |
| CG1836-PB | 1032 | Rad23-RB | 1..163 | 222..384 | 815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4E-3-RA | 1040 | CG8023-RA | 159..890 | 9..740 | 3660 | 100 | Plus |
| eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 224..529 | 210 | 72.1 | Plus |
| eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 224..529 | 210 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8229498..8229757 | 60..319 | 1300 | 100 | Plus |
| 3L | 28110227 | 3L | 8230261..8230418 | 583..740 | 790 | 100 | Plus |
| 3L | 28110227 | 3L | 8229952..8230052 | 394..494 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 8230115..8230203 | 494..582 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 8229821..8229898 | 317..394 | 390 | 100 | Plus |
| 3L | 28110227 | 3L | 8229382..8229433 | 9..60 | 260 | 100 | Plus |
| 3L | 28110227 | 3L | 7895198..7895260 | 204..266 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:22:09 has no hits.
MXO02502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:30 Download gff for
MXO02502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1836-PA | 1..630 | 9..638 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:49 Download gff for
MXO02502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-3-RA | 159..895 | 9..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:25 Download gff for
MXO02502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-3-RA | 159..895 | 9..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:25 Download gff for
MXO02502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8229499..8229757 | 61..319 | 100 | -> | Plus |
| 3L | 8229824..8229898 | 320..394 | 100 | -> | Plus |
| 3L | 8229953..8230052 | 395..494 | 100 | -> | Plus |
| 3L | 8230116..8230203 | 495..582 | 100 | -> | Plus |
| 3L | 8230261..8230423 | 583..746 | 98 | | Plus |
| 3L | 8229382..8229433 | 9..60 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:49 Download gff for
MXO02502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8222482..8222533 | 9..60 | 100 | -> | Plus |
| arm_3L | 8222599..8222857 | 61..319 | 100 | -> | Plus |
| arm_3L | 8222924..8222998 | 320..394 | 100 | -> | Plus |
| arm_3L | 8223053..8223152 | 395..494 | 100 | -> | Plus |
| arm_3L | 8223216..8223303 | 495..582 | 100 | -> | Plus |
| arm_3L | 8223361..8223523 | 583..746 | 98 | | Plus |
