MXO02507.5prime Sequence
804 bp (718 high quality bases) assembled on 2007-04-13
> MXO02507.5prime
CAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCGGACTGCTC
CACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAGGACAAGAT
TATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGACTGCGACT
ACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGTACAGAGAC
GACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATATGCCATCCC
CGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCACGGAGCCGA
GCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCGCCACCACC
GGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTCTCCAGCCA
CCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGAGCTGTCCC
ACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGACGAACGTG
TATCCCAGGCCCACCATCACGATAATATCCAACGACATGGACGTGGTGAA
GCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGATGGCAGCG
CCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCTACCAGTGC
GTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTGGCCACGTC
CGCGGCGGCGGGCAGGAGCCGCGTCGACTTCAGCCTGTGGCTGTTTTGTT
TTCTGTACTACCTGCTCTGCGAGCTGAAGGTATTGGCCGCAAGCTTTCTA
GACC
MXO02507.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16983-PE | 489 | skpA-RE | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PF | 489 | skpA-RF | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PC | 489 | skpA-RC | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PB | 489 | skpA-RB | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PG | 489 | skpA-RG | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PD | 489 | skpA-RD | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PA | 489 | skpA-RA | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PH | 489 | skpA-RH | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG8881-PA | 486 | skpB-RA | 439..479 | 450..490 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5597-RA | 920 | CG5597-RA | 106..885 | 9..788 | 3870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23888125..23888402 | 249..526 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 23888481..23888742 | 527..788 | 1280 | 99.2 | Plus |
| 2R | 25286936 | 2R | 23887872..23888064 | 56..248 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 23887078..23887126 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:59 has no hits.
MXO02507.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:32 Download gff for
MXO02507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16983-PE | 1..489 | 9..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:19 Download gff for
MXO02507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5597-RA | 102..888 | 5..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:16 Download gff for
MXO02507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5597-RA | 102..888 | 5..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:16 Download gff for
MXO02507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23887074..23887126 | 5..57 | 96 | -> | Plus |
| 2R | 23887874..23888064 | 58..248 | 100 | -> | Plus |
| 2R | 23888125..23888402 | 249..526 | 100 | -> | Plus |
| 2R | 23888481..23888745 | 527..792 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:19 Download gff for
MXO02507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19774597..19774649 | 5..57 | 96 | -> | Plus |
| arm_2R | 19775397..19775587 | 58..248 | 100 | -> | Plus |
| arm_2R | 19775648..19775925 | 249..526 | 100 | -> | Plus |
| arm_2R | 19776004..19776268 | 527..792 | 98 | | Plus |
