MXO02514.5prime Sequence
895 bp (820 high quality bases) assembled on 2007-04-13
> MXO02514.5prime
CAGTCGACATGTCGGAAACAGTTGATAGCACAGAGGTAAAGTCGCCGTCG
TACGACTTATCCAAGTTCCAACTGAAGCGAATCCTAACCAACAACAGCGT
TAGGAAAAGTATATCCCTGCTTGGCACTTTTCCGGATTTAGGAACCGATG
ATGCCATTGTTGTTTTCGAGAAAAATGCGTACCGGGAAAGCGATGTGGCC
ACGGCGTCATCAGAAGAGTCTCCCAAGAAGCCTAGCTATTTTACCGCGGA
CCTGAAAGTTGACACTGAGTTTATCAACAATATCTACGGCAGTTTTCAGG
TTGTGCCGACCCAGGATTTGTGCAGTGTGAAAAGCACAGTCATTTATCCC
GCCACCGAGAAGCACATCGAGAAATACTCAGTATCTCAAAAGTATCTCAT
CCGGGAGACTCCTGATCTCTACCAAAGAATAACTCTTCCATATCTCACCT
CAAGTCAATTCTCCCTCGAGTGGGTCTACAACATACTCGAGCATAAGCAG
GAGACGGAACGTATCGTGTACGAGGACAGGGATCCAAAGACTGGCTTTAT
CCTTCTGCCCGATCTCAAATGGGACGGACGCAATGTGGAAACCCTCTATC
TGCTGGGAATTGTCCACAAGCGCGACATCAAGTCTCTGCGCGACTTGAAT
GAAAGTCATCTCGATCTTTTGCGCAACGTGCGCCAAGCGTCGAAGGACGC
AATTGCCAAGCTATACGGCATTAATCCCAATCAGCTGCGCATGTACTTTC
ATTACCAGCCGTCCTTCTATCACCTCCACGTGCACATCAATCCAGTACGG
AACGATGCACCGGGCATATGGTGCGAGAAGTCCCACATGCTGGACACGGT
GATCAACAACTTGCAGCTGATGCCGGACTACTATCAGCGAGCCAC
MXO02514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2257-PA | 552 | Ubc-E2H-RA | 1..549 | 9..557 | 2720 | 99.8 | Plus |
| CG2257-PC | 552 | Ubc-E2H-RC | 1..549 | 9..557 | 2720 | 99.8 | Plus |
| CG2257-PB | 552 | Ubc-E2H-RB | 1..549 | 9..557 | 2720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-RA | 1335 | CG2091-RA | 98..984 | 9..895 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5753669..5754239 | 895..325 | 2840 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5754509..5754677 | 177..9 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5754299..5754448 | 326..177 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:45 has no hits.
MXO02514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:35 Download gff for
MXO02514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2257-PB | 1..552 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:17 Download gff for
MXO02514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..984 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:40 Download gff for
MXO02514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..984 | 9..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:40 Download gff for
MXO02514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5754509..5754677 | 9..177 | 100 | | Minus |
| 3R | 5753669..5754239 | 325..895 | 99 | <- | Minus |
| 3R | 5754301..5754447 | 178..324 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:17 Download gff for
MXO02514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1580231..1580399 | 9..177 | 100 | | Minus |
| arm_3R | 1579391..1579961 | 325..895 | 99 | <- | Minus |
| arm_3R | 1580023..1580169 | 178..324 | 100 | <- | Minus |
