MXO02515.5prime Sequence
859 bp (766 high quality bases) assembled on 2007-04-13
> MXO02515.5prime
CAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCTCAAGTTTA
ATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGTGATTACAA
TGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCCGGAGTCAT
CCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGCCTGCCTGG
TTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTGCGGAACGT
GGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAAGGCAGATA
AGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCATACGAGAA
ACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAATCATTGAC
CTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCGCGCCCACT
GGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGCTCTGCAAG
CAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGGTCTGTCTG
GCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTTCTTTATGA
CTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATGAGGTCAAG
GATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGCCTAAGAAA
AGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCGCTGCCTAA
ACTTCTCCTCTTTAGATAAACTGCGTCAGTTTGCAGCAGAGCGTGAGGTC
AAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACAAATGGATT
AGTGCATCT
MXO02515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5771-PB | 645 | Rab11-RB | 1..642 | 9..650 | 3110 | 99.3 | Plus |
| CG5771-PA | 645 | Rab11-RA | 1..642 | 9..650 | 3110 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10194-RA | 1215 | CG10194-RA | 34..884 | 9..859 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19489300..19489642 | 659..317 | 1715 | 100 | Minus |
| 2L | 23513712 | 2L | 19489705..19489919 | 316..102 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 19489013..19489213 | 859..659 | 990 | 99.5 | Minus |
| 2L | 23513712 | 2L | 19489978..19490071 | 102..9 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:51 has no hits.
MXO02515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:36 Download gff for
MXO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5771-PA | 1..645 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:55 Download gff for
MXO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10194-RA | 34..884 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:02 Download gff for
MXO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10194-RA | 34..884 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:02 Download gff for
MXO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19489013..19489212 | 660..859 | 99 | <- | Minus |
| 2L | 19489300..19489642 | 317..659 | 100 | <- | Minus |
| 2L | 19489705..19489919 | 102..316 | 100 | <- | Minus |
| 2L | 19489979..19490071 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:55 Download gff for
MXO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19489705..19489919 | 102..316 | 100 | <- | Minus |
| arm_2L | 19489013..19489212 | 660..859 | 99 | <- | Minus |
| arm_2L | 19489300..19489642 | 317..659 | 100 | <- | Minus |
| arm_2L | 19489979..19490071 | 9..101 | 100 | | Minus |
