MXO02517.5prime Sequence
772 bp (772 high quality bases) assembled on 2007-04-13
> MXO02517.5prime
CAGTCGACATGTTCGCAATCGCATCTCGCAGTGGTTTTGTGCCTTTTGGT
CTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAGTATGGTG
ATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGAAAACTCG
GCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGTTGAAGGT
GGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTGGGCATAA
CTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCAAAGGATC
GTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACGAAGTGAA
AATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATCCAGGGCA
AGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACATGACAATG
GTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGGTGAAGAA
TGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATGAAGCCGG
AGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAAGGCGCTG
GGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCATTTACAA
GGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTACCTGGGCG
TCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTTTGCGGAT
GAATCGGCAAGCTTTCTAGACC
MXO02517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11853-PA | 750 | to-RA | 1..747 | 9..756 | 3700 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| to-RB | 1253 | CG11853-RB | 10..757 | 8..756 | 3720 | 99.9 | Plus |
| to-RA | 1038 | CG11853-RA | 10..757 | 8..756 | 3720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25240867..25241172 | 451..756 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 25240366..25240607 | 71..312 | 1210 | 100 | Plus |
| 3R | 32079331 | 3R | 25240674..25240817 | 312..455 | 705 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25240189..25240250 | 8..70 | 265 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:09 has no hits.
MXO02517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:36 Download gff for
MXO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11853-PA | 1..750 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:44 Download gff for
MXO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| to-RA | 10..763 | 8..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:15 Download gff for
MXO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| to-RA | 10..763 | 8..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:15 Download gff for
MXO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25240366..25240606 | 71..311 | 100 | -> | Plus |
| 3R | 25240674..25240813 | 312..451 | 100 | -> | Plus |
| 3R | 25240189..25240250 | 8..70 | 98 | -> | Plus |
| 3R | 25240868..25241178 | 452..764 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:44 Download gff for
MXO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21065911..21065972 | 8..70 | 98 | -> | Plus |
| arm_3R | 21066088..21066328 | 71..311 | 100 | -> | Plus |
| arm_3R | 21066396..21066535 | 312..451 | 100 | -> | Plus |
| arm_3R | 21066590..21066900 | 452..764 | 98 | | Plus |
