Clone MXO02519 Report

Search the DGRC for MXO02519

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:25
Well:19
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptqkr58E-1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02519.5prime Sequence

957 bp (802 high quality bases) assembled on 2007-04-13

> MXO02519.5prime
CAGTCGACATGCCGCGCGACTACGACAGAGACTACAGCGAGGACGCCGCC
GACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACCGGTGCTCC
AGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCACGCCGCCC
TGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATCTGCAGGAG
TGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATCACCAAGCG
CTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACGCATACCAA
AGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCCGCGTGGCC
CAGAAAGTCTTGTTCCCCATCATGGAGTACCCCAAGTTCAATTTCGTTGG
CAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCAGGAAGAGA
CTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCGACCACGGT
AAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCCCATCTCAG
CCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGCGGAGGCCT
ATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTATGATACCC
GACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATGGATGGCAA
GGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTATGGCGATC
ATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAAAGCCCAAA
GTCTATACGATTCTGGGAGAAGCTCGATATGTGATGGACGATCCCAACTA
TGGCATCGTAAAGACGCACAGATCACGGGACCACGAGCTATATGACCACC
ATGGGAAATATGATCGCTATGCCACACCGTCGCCCCAAACATCATAGCAC
TCGGACC

MXO02519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5680-PB 1119 bsk-RB 1..850 9..858 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RD 1902 CG3613-RD 124..1068 9..953 4560 98.9 Plus
qkr58E-1-RC 2122 CG3613-RC 124..1068 9..953 4560 98.9 Plus
qkr58E-1-RA 1592 CG3613-RA 124..1068 9..953 4560 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22414570..22415075 769..264 2515 99.8 Minus
2R 25286936 2R 22415140..22415395 264..9 1265 99.6 Minus
2R 25286936 2R 22414408..22414510 871..769 425 94.2 Minus
2R 25286936 2R 22414201..22414286 953..868 370 95.3 Minus
2R 25286936 2R 17471170..17471359 385..574 260 75.8 Plus
2R 25286936 2R 22595151..22595289 385..523 245 78.4 Plus
2R 25286936 2R 22466682..22466811 385..514 230 78.5 Plus
2R 25286936 2R 21773807..21773943 385..521 205 76.6 Plus
2R 25286936 2R 22651051..22651189 385..523 200 76.3 Plus
2R 25286936 2R 22410945..22411053 493..385 185 78 Minus
Blast to na_te.dros performed on 2014-11-28 22:07:22 has no hits.

MXO02519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:37 Download gff for MXO02519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5680-PB 1..850 9..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:55 Download gff for MXO02519.5prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 120..1071 1..957 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:21 Download gff for MXO02519.5prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 120..1071 1..957 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:21 Download gff for MXO02519.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22414198..22414282 872..957 94 <- Minus
2R 22414408..22414509 770..871 96 <- Minus
2R 22414570..22415074 265..769 99 <- Minus
2R 22415140..22415399 1..264 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:55 Download gff for MXO02519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18302075..18302579 265..769 99 <- Minus
arm_2R 18301703..18301787 872..957 94 <- Minus
arm_2R 18301913..18302014 770..871 96 <- Minus
arm_2R 18302645..18302904 1..264 98   Minus