MXO02519.5prime Sequence
957 bp (802 high quality bases) assembled on 2007-04-13
> MXO02519.5prime
CAGTCGACATGCCGCGCGACTACGACAGAGACTACAGCGAGGACGCCGCC
GACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACCGGTGCTCC
AGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCACGCCGCCC
TGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATCTGCAGGAG
TGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATCACCAAGCG
CTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACGCATACCAA
AGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCCGCGTGGCC
CAGAAAGTCTTGTTCCCCATCATGGAGTACCCCAAGTTCAATTTCGTTGG
CAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCAGGAAGAGA
CTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCGACCACGGT
AAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCCCATCTCAG
CCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGCGGAGGCCT
ATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTATGATACCC
GACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATGGATGGCAA
GGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTATGGCGATC
ATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAAAGCCCAAA
GTCTATACGATTCTGGGAGAAGCTCGATATGTGATGGACGATCCCAACTA
TGGCATCGTAAAGACGCACAGATCACGGGACCACGAGCTATATGACCACC
ATGGGAAATATGATCGCTATGCCACACCGTCGCCCCAAACATCATAGCAC
TCGGACC
MXO02519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5680-PB | 1119 | bsk-RB | 1..850 | 9..858 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RD | 1902 | CG3613-RD | 124..1068 | 9..953 | 4560 | 98.9 | Plus |
qkr58E-1-RC | 2122 | CG3613-RC | 124..1068 | 9..953 | 4560 | 98.9 | Plus |
qkr58E-1-RA | 1592 | CG3613-RA | 124..1068 | 9..953 | 4560 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22414570..22415075 | 769..264 | 2515 | 99.8 | Minus |
2R | 25286936 | 2R | 22415140..22415395 | 264..9 | 1265 | 99.6 | Minus |
2R | 25286936 | 2R | 22414408..22414510 | 871..769 | 425 | 94.2 | Minus |
2R | 25286936 | 2R | 22414201..22414286 | 953..868 | 370 | 95.3 | Minus |
2R | 25286936 | 2R | 17471170..17471359 | 385..574 | 260 | 75.8 | Plus |
2R | 25286936 | 2R | 22595151..22595289 | 385..523 | 245 | 78.4 | Plus |
2R | 25286936 | 2R | 22466682..22466811 | 385..514 | 230 | 78.5 | Plus |
2R | 25286936 | 2R | 21773807..21773943 | 385..521 | 205 | 76.6 | Plus |
2R | 25286936 | 2R | 22651051..22651189 | 385..523 | 200 | 76.3 | Plus |
2R | 25286936 | 2R | 22410945..22411053 | 493..385 | 185 | 78 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:22 has no hits.
MXO02519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:37 Download gff for
MXO02519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5680-PB | 1..850 | 9..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:55 Download gff for
MXO02519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 120..1071 | 1..957 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:21 Download gff for
MXO02519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 120..1071 | 1..957 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:21 Download gff for
MXO02519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22414198..22414282 | 872..957 | 94 | <- | Minus |
2R | 22414408..22414509 | 770..871 | 96 | <- | Minus |
2R | 22414570..22415074 | 265..769 | 99 | <- | Minus |
2R | 22415140..22415399 | 1..264 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:55 Download gff for
MXO02519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18302075..18302579 | 265..769 | 99 | <- | Minus |
arm_2R | 18301703..18301787 | 872..957 | 94 | <- | Minus |
arm_2R | 18301913..18302014 | 770..871 | 96 | <- | Minus |
arm_2R | 18302645..18302904 | 1..264 | 98 | | Minus |