MXO02520.5prime Sequence
804 bp (575 high quality bases) assembled on 2007-04-13
> MXO02520.5prime
CAATCGACATGGAGCAAACAAGGCCATTTTACGATTTCAGCATACCATAC
AACAAGGACGACTCCGTGTTGCGGGCCCTGCTTAACGAGCTGGTGGAAAC
GGGCTACAAAACAGTGGCCATCGACCAGAGTTTCGACCACAGCAAAAAGG
ATCCGGGCAAACGTGGGTCCAAGATGTTTCCCGAGCCTCATAAGATCGAG
CATCTGCGCAAGGAGTTCCAGGACAAGCTGAGAATCCTGCAAAGAATCAC
CATTCTCTACGTAGACGTCAATGTGGCCCACGCGATGAGTGTCTCCCATA
ATCTGCGGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAGATGCCGCC
CTGACGCACTGCTGCACTGCCTTCAATGGGGACTTGATAACTTTTGATCC
TGTGGCTGGGTCCCGACTCTTGGTAAACCGAAAAGCATACCAGGTGGCAG
TCCGTCGGGGCATGTTCTTCGAAATTAAATACGCTCCATCTATCTGCGAT
TCGAATAACAGGAAGGACATGATAAAGATCGCCCATAACTATTGCACCAA
AGGGAAGTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCACGAATTCC
AGCTGAGAGGACCTTACGACGTTGCTAATTTGGCCTTTATCTTCGGCCTA
TCATAGGACCAAGGGAAAAATGCTGTGGACGGGCACTGCCGGGAACTTTT
CCTGAAGGCTGAGGCGCGTCGTCTGGGAAAAACCATCATGTTTCTCAAAG
GAAACGGTCCCATAATATACTCGGATAGCTCTGAGGACGAGAAAAGCACC
GAAT
MXO02520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-PA | 852 | CG5823-RA | 37..662 | 44..669 | 2730 | 97.4 | Plus |
| CG5823-PA | 852 | CG5823-RA | 663..830 | 671..838 | 615 | 94.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpp30-RB | 1105 | CG11606-RB | 57..851 | 9..803 | 3915 | 99.5 | Plus |
| Rpp30-RA | 981 | CG11606-RA | 57..851 | 9..803 | 3915 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 251526..251802 | 632..356 | 1370 | 99.6 | Minus |
| 2L | 23513712 | 2L | 251979..252166 | 287..100 | 910 | 98.9 | Minus |
| 2L | 23513712 | 2L | 251293..251464 | 803..632 | 845 | 99.4 | Minus |
| 2L | 23513712 | 2L | 252227..252317 | 99..9 | 455 | 100 | Minus |
| 2L | 23513712 | 2L | 251856..251925 | 356..287 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:36 has no hits.
MXO02520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:37 Download gff for
MXO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-PA | 1..830 | 9..838 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:26 Download gff for
MXO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp30-RA | 57..851 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:32 Download gff for
MXO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp30-RA | 57..851 | 9..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:32 Download gff for
MXO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 251292..251464 | 632..804 | 98 | <- | Minus |
| 2L | 251527..251801 | 357..631 | 99 | <- | Minus |
| 2L | 251856..251924 | 288..356 | 100 | <- | Minus |
| 2L | 251979..252166 | 100..287 | 98 | <- | Minus |
| 2L | 252227..252317 | 9..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:26 Download gff for
MXO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 251979..252166 | 100..287 | 98 | <- | Minus |
| arm_2L | 252227..252317 | 9..99 | 100 | | Minus |
| arm_2L | 251292..251464 | 632..804 | 98 | <- | Minus |
| arm_2L | 251527..251801 | 357..631 | 99 | <- | Minus |
| arm_2L | 251856..251924 | 288..356 | 100 | <- | Minus |
