MXO02521.5prime Sequence
906 bp (821 high quality bases) assembled on 2007-04-13
> MXO02521.5prime
CAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGCTGATTGCT
TCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGCGAGTGCAA
GGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCAGCACCTGA
TCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTGTCTGCTGT
CCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAGACGAGGCC
TTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGCCTGCCAGT
CCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAGAGTTTCCC
TTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAGTCGGACAT
CAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGTACTGACTG
CGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGACTGGACCCA
AACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTGGACTACAA
CAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGTCAACTATG
TGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCTTTAAAAAC
GATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAACGACCATGT
GGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCAGCAGGTCA
CAGCCGCCGGCTGGGGATTTACCGCGGACGGTGTGAAGTCCTCGCACCTG
CTGAAGGTCAACCTCCAGCGATTCAATGACGAGGTGTGCCAGAAGCGCCT
GCGTTTCAGCATCGATACACGCACCCAGTTCTGTGCCGGCTCAATGTCCA
GCCAAG
MXO02521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11254-PA | 1380 | mael-RA | 1..873 | 9..881 | 4365 | 100 | Plus |
| CG11254-PB | 1380 | mael-RB | 1..873 | 9..881 | 4365 | 100 | Plus |
| CG11254-PC | 1389 | mael-RC | 128..882 | 127..881 | 3775 | 100 | Plus |
| CG11254-PC | 1389 | mael-RC | 1..120 | 9..128 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3700-RA | 1183 | CG3700-RA | 31..928 | 9..906 | 4475 | 99.9 | Plus |
| CG4927-RC | 1449 | CG4927-RC | 450..628 | 429..607 | 220 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22895060..22895490 | 476..906 | 2140 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22894465..22894717 | 9..261 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 22894783..22894996 | 262..475 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 16573258..16573333 | 532..607 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:25 has no hits.
MXO02521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:38 Download gff for
MXO02521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11254-PB | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:34 Download gff for
MXO02521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RA | 24..928 | 1..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:15 Download gff for
MXO02521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RA | 24..928 | 1..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:15 Download gff for
MXO02521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22894458..22894717 | 1..261 | 98 | -> | Plus |
| 2R | 22894783..22894996 | 262..475 | 100 | -> | Plus |
| 2R | 22895060..22895490 | 476..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:34 Download gff for
MXO02521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18781981..18782240 | 1..261 | 98 | -> | Plus |
| arm_2R | 18782306..18782519 | 262..475 | 100 | -> | Plus |
| arm_2R | 18782583..18783013 | 476..906 | 99 | | Plus |
