MXO02526.5prime Sequence
857 bp (772 high quality bases) assembled on 2007-04-13
> MXO02526.5prime
CCCAAAAGGCGAAGTTATCAGTCGACATGAAATATTTTGGCCGAGAGGAA
GGNGGAGCCACCCACTCCAGACTGGTCATCTGCGATGAGAGCGGCCAATC
TGTGGGCGCCACCACCGGCCTGGGCACCAATCACTGGGGCATTGGCATTC
CGGAGTGCGCCCGCCGGATCGCTGACATGGTGGAGCGGGCGAAGGAGGAG
GCGGGCATTCCCAAGGAGACGCCCCTCACAAGTCTGGGATTGAGCCTTAG
CGGCTGCGAGCAGGAGGCCACCAATCGCGAGCTGGAGCAGGAGCTGCGCA
CCACGTTTCCGGGCCTGGCCCAGAACTATGCCGTGTCCAGCGACACCATG
GGCAGCATGTACACCGCCTCGTCCATCGGAGGATTTTTCCTCCCCCCACG
AACCGGATCCAATTGCCTGCTGAAAAACCCTGACGGCTCCACGTCCAATT
GTGGCGGCTGGGGCAACTTCCTCGGGGACGAGGGAAGCGCCTGGTACATC
TCGTATCGCGCAGTCAAGGTGGTGTTCGACCATATGGACAACTTTGAGCA
GTCAGCGGCTCCCGTGGAGAAAACTTGGAGTCTGATCAAGGAGCACTTTA
GTTTGGAGACGCGCCTGGATATGCTGCCGCACTGTTACGCCAAGTTCGAC
AAGCCCTTCTTCGCCAATCTGTGCAAAAAGCTGTCGCAGAACGCCGAAAA
TGGAGACGAACTGGCGCGCAGCTTGTTTCGCGAAGCTGGCGTTCATCTGG
CCAGAATGATCCTTGCCCTGCTGCCCCATGTGCACCAGGATCTGGTCAAG
TCCGGGGACCTAAGCGTAGTGTGCGTAGGATCCGTGTGGTCCAGCTGGGA
TCTGCTG
MXO02526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6218-PA | 1047 | CG6218-RA | 400..831 | 426..857 | 2135 | 99.7 | Plus |
| CG6218-PA | 1047 | CG6218-RA | 1..357 | 27..383 | 1666 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6218-RB | 1400 | CG6218-RB | 223..1053 | 27..857 | 3889 | 97.8 | Plus |
| CG6218-RA | 2091 | CG6218-RA | 369..1199 | 27..857 | 3889 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15338800..15339168 | 857..489 | 1830 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15339678..15339888 | 264..54 | 1040 | 99.5 | Minus |
| 3R | 32079331 | 3R | 15339360..15339588 | 489..261 | 965 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:46:57 has no hits.
MXO02526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:40 Download gff for
MXO02526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6218-PA | 1..831 | 27..857 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:53 Download gff for
MXO02526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6218-RA | 364..1199 | 22..857 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:35 Download gff for
MXO02526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6218-RA | 364..1199 | 22..857 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:35 Download gff for
MXO02526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15339679..15339889 | 53..263 | 99 | <- | Minus |
| 3R | 15339360..15339585 | 264..489 | 94 | <- | Minus |
| 3R | 15338800..15339167 | 490..857 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:53 Download gff for
MXO02526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11164522..11164889 | 490..857 | 99 | <- | Minus |
| arm_3R | 11165082..11165307 | 264..489 | 94 | <- | Minus |
| arm_3R | 11165401..11165611 | 53..263 | 99 | <- | Minus |
