MXO02528.5prime Sequence
830 bp (788 high quality bases) assembled on 2007-04-13
> MXO02528.5prime
CAGTCGACATGCATACCGTGTACCCGCTTGGGAAGAACAAGCTGAGCGAT
GTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCCTACCTCCA
GGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAGCGAGTTGG
AGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCCTCAACCGA
ACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATTAAACGTTA
CTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAAGCATATTC
AAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTACCTCGCGG
TTCAACATTCTGCAGAATATATTCCCTCCCCATCCGGAATTTAGGCGAAA
TCTGGGCACCCAGGCCCTTATTCGCGACTCCGTACTGTTCAACATGCTGC
ACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCCTCATCTGC
GAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTAGCCAGAAA
TAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTCTACTACTT
CGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCAGTGGTGGA
AGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGGCGTGATGA
GATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAACGCATTGG
CTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCAGAGAAACGCG
GACGAGGCCGTGCAGGGTGATGAAAGACCT
MXO02528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15437-PA | 1476 | morgue-RA | 382..802 | 390..810 | 2055 | 99.5 | Plus |
| CG15437-PA | 1476 | morgue-RA | 1..369 | 9..377 | 1845 | 100 | Plus |
| CG15437-PA | 1476 | morgue-RA | 800..872 | 807..879 | 365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3223-RA | 1488 | CG3223-RA | 89..910 | 9..830 | 3915 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8009702..8010119 | 150..567 | 1970 | 98.1 | Plus |
| 3R | 32079331 | 3R | 8010178..8010440 | 568..830 | 1315 | 100 | Plus |
| 3R | 32079331 | 3R | 8009488..8009629 | 9..150 | 635 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:16 has no hits.
MXO02528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:41 Download gff for
MXO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 1..870 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:26 Download gff for
MXO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 80..910 | 1..830 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:38 Download gff for
MXO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 80..910 | 1..830 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:38 Download gff for
MXO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8009479..8009629 | 1..150 | 94 | -> | Plus |
| 3R | 8009703..8010119 | 151..567 | 98 | -> | Plus |
| 3R | 8010178..8010440 | 568..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:26 Download gff for
MXO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3835201..3835351 | 1..150 | 94 | -> | Plus |
| arm_3R | 3835425..3835841 | 151..567 | 98 | -> | Plus |
| arm_3R | 3835900..3836162 | 568..830 | 100 | | Plus |
