MXO02531.5prime Sequence
930 bp (807 high quality bases) assembled on 2007-04-13
> MXO02531.5prime
CAGTCGACATGGACAACTTCGGCCTGGGCGGATCGGATCTAAGCAAGGGG
CAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTGATCACATA
TTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAGTAAAAACA
AGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGCTAGCCGAG
CAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTACGAGCTTAT
GATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAGTTGGGCCG
ATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAATCGGTGGTG
CTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTGTGGCAGGC
GCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAAGACGCTGA
TAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCAACTTGGAC
GTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAATTGACTTC
TGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTATTTTTATTG
ACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACCACGAGGCT
ACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGCCTCAGCAC
GAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAGGCCGCANG
ATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCCACATTGGT
CTGCCCTCGGAGACCCAACGAAAAGACATCCTGAAGCTGATCCCTCCATC
GGAGGAAGTAAGTCAGGATGTCGACTTGAATCGCTTGTCCAGCTCACAAA
TGGCTTCTCGGGCTCAGACCTGCGGGGAAT
MXO02531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10536-PB | 735 | cbx-RB | 1..732 | 9..740 | 3660 | 100 | Plus |
| CG10536-PA | 645 | cbx-RA | 1..642 | 99..740 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmd-RC | 1719 | CG5395-RC | 110..1034 | 7..930 | 4514 | 99.4 | Plus |
| nmd-RA | 1300 | CG5395-RA | 110..1034 | 7..930 | 4514 | 99.4 | Plus |
| nmd-RB | 1172 | CG5395-RB | 164..906 | 189..930 | 3619 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10302858..10303600 | 930..189 | 3594 | 99.2 | Minus |
| 2L | 23513712 | 2L | 10303654..10303838 | 191..7 | 910 | 99.5 | Minus |
| 2L | 23513712 | 2L | 14766281..14766791 | 289..799 | 339 | 71 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:23 has no hits.
MXO02531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:42 Download gff for
MXO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10536-PB | 1..735 | 9..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:33 Download gff for
MXO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmd-RA | 105..1034 | 1..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:04 Download gff for
MXO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmd-RA | 105..1034 | 1..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:04 Download gff for
MXO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10302858..10303598 | 191..930 | 99 | <- | Minus |
| 2L | 10303655..10303843 | 1..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:33 Download gff for
MXO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10303655..10303843 | 1..190 | 97 | | Minus |
| arm_2L | 10302858..10303598 | 191..930 | 99 | <- | Minus |
