MXO02533.5prime Sequence
878 bp (817 high quality bases) assembled on 2007-04-13
> MXO02533.5prime
CAGTCGACATGGCTGCAGTTTCGGATATTCCAGTGCACCTGCCCAAGCTG
CTGGCTCTGTTCAAGACGGTGGTGCCCAAGCTGGTGAACAACAAGCACAA
GGGACAGTACGGACGCATTGGAGTGATCGGTGGGTCCCTGGAGTACACCG
GAGCGCCGTACTTCGCGGCCATTTCCTCGATAAGAGTGGGCGCTGACCTG
GCGCATGTGTTCTGCCATTCAAATGCGTCGGCCATTATCAAGTCCTACAG
TCCCGATCTTATCGTGCATCCAGTGCTAGACTGTGTGGATGCAGTGGAGA
GAATAGCGCCCTGGTTAGAGCGACTTCACGTCGTTGTTATTGGACCTGGA
CTGGGTCGGGAGCCGGGCATCCTGAAGACGGCATCCAACGTACTCAAGCT
GTGCATGGACACCAAGAAACCAGTTGTCATAGACGCCGATGGACTGTTTC
TGCTCAACGACAATCTGAATCTGATCTGTGGACAGCCGAATGTCATACTC
ACGCCAAATGTCATGGAGTTCCAGAGACTGTTTGGCGAGGATGACCAGGC
GGCGCGCCAGAAAATGTCCCTCCTGGGAGCCGGAGTAACTGTCCTGGAGA
AGGGCGCCAACGACAAGATCTATCTCCCTCACTGCAACGAAGTTCACTCA
ATGCCTAGCGGCGGTTCCGGTCGCAGGTGCGGTGGACAAGGTGACCTGCT
CTCCGGATCTTTGGCCACCTTCTTCTCGTGGTCACTGCAGTCGGGTGAAC
CCAATCCCGCCCTGGTAGCTGCATGTGCCTCTAGTTACTTTGTGAAAAAG
TTAAACGCGGCTGCATTTCAAAAGTTTGGCCGCAGCCTACTGGCCAGTGA
CATGGTCATCAAATACCCAGCGTATTTC
MXO02533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7864-PA | 900 | CG7864-RA | 1..892 | 9..900 | 4435 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 78..948 | 9..878 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096684..19097227 | 878..336 | 2670 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19097304..19097632 | 337..9 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:01 has no hits.
MXO02533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:43 Download gff for
MXO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-PA | 1..892 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:21 Download gff for
MXO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 70..948 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:17 Download gff for
MXO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 70..948 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:17 Download gff for
MXO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19096684..19097227 | 336..878 | 99 | <- | Minus |
| 3L | 19097306..19097640 | 1..335 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:21 Download gff for
MXO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19089784..19090327 | 336..878 | 99 | <- | Minus |
| arm_3L | 19090406..19090740 | 1..335 | 99 | | Minus |
