MXO02534.5prime Sequence
894 bp (834 high quality bases) assembled on 2007-04-13
> MXO02534.5prime
CAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGGCGCAATCT
CCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAGGAGCCCCT
GCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGCGGTGCCCT
GGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGCAGCCCATC
ATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGACAGGCTGTG
CCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCTGCCCGGGC
ACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCATCTTCTGG
GACGGCATATGCCTGATTCTCCGGATACCCCGCAAGTATAACTGGAAGAA
CGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTTCATGTACG
CGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCGATATCGCG
GGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACTGGCAGGGC
GCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAAGCAGCCCT
GCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGTACGATGGG
TCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGAATGAGGCA
CAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAGGCTAAAAG
TAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCTACGCACGC
CAGATTCGCTGTCGCGTGCTCAACATTCGGGGTATTCCCGGCATGAAGTT
CGAGACGCCACAGGTGTATGCGGATGTGATTGCCACGCTGCGGG
MXO02534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17248-PA | 552 | n-syb-RA | 1..549 | 9..557 | 2745 | 100 | Plus |
| CG17248-PC | 552 | n-syb-RC | 1..549 | 9..557 | 2745 | 100 | Plus |
| CG17248-PE | 579 | n-syb-RE | 30..576 | 11..557 | 2735 | 100 | Plus |
| CG17248-PB | 579 | n-syb-RB | 30..576 | 11..557 | 2735 | 100 | Plus |
| CG17248-PD | 666 | n-syb-RD | 30..392 | 11..373 | 1815 | 100 | Plus |
| CG17248-PD | 666 | n-syb-RD | 479..663 | 373..557 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kraken-RB | 1240 | CG3943-RB | 88..974 | 8..894 | 4390 | 99.7 | Plus |
| kraken-RA | 1320 | CG3943-RA | 168..1054 | 8..894 | 4390 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 853544..854273 | 165..894 | 3605 | 99.6 | Plus |
| 2L | 23513712 | 2L | 853192..853278 | 79..165 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 852935..853005 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:31 has no hits.
MXO02534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:44 Download gff for
MXO02534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17248-PC | 1..552 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:39 Download gff for
MXO02534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kraken-RA | 160..1054 | 1..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:19 Download gff for
MXO02534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kraken-RA | 160..1054 | 1..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:19 Download gff for
MXO02534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 852927..853005 | 1..78 | 94 | -> | Plus |
| 2L | 853192..853278 | 79..165 | 100 | -> | Plus |
| 2L | 853545..854273 | 166..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:39 Download gff for
MXO02534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 852927..853005 | 1..78 | 94 | -> | Plus |
| arm_2L | 853192..853278 | 79..165 | 100 | -> | Plus |
| arm_2L | 853545..854273 | 166..894 | 99 | | Plus |
