MXO02535.5prime Sequence
874 bp (773 high quality bases) assembled on 2007-04-13
> MXO02535.5prime
CAGTCGACATGTGGACCTGCCCCTGCCAGCTCTGTTTCTATCTACTCTCG
ACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTCTACAAGAC
GAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGACCTTCCTGG
ACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGGACTCGCCA
AGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAGCAGCGCTT
GCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAAATCTGCTG
GCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACGGCAGTCAG
GATGCCACCGTATCCGTCCCCTTGGGTTACTCGAAAAAGCACGGAGCAGA
AAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGGAGGTGCCG
TTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCTTCGCTGAT
GCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAGGTGGCCCT
CAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCATTGGATCGA
GAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCTTCAGAACA
ATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCCGTGCGCTC
CATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAACGACGGCCA
GGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTGATGTTGAG
CTGCTGTACCTCGCTGAGAATTTGAAGCTACCAATGTCCGAGGTTGCCGT
TCGATGGACGGAGATCGATGGTTC
MXO02535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3564-PA | 627 | CG3564-RA | 1..624 | 9..632 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wol-RA | 1335 | CG7870-RA | 163..1028 | 9..874 | 4300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8301936..8302332 | 646..250 | 1970 | 99.7 | Minus |
| 2L | 23513712 | 2L | 8301652..8301882 | 874..644 | 1155 | 100 | Minus |
| 2L | 23513712 | 2L | 8302524..8302699 | 249..74 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 8302758..8302823 | 74..9 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:06 has no hits.
MXO02535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:44 Download gff for
MXO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3564-PA | 1..627 | 9..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:24 Download gff for
MXO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wol-RA | 163..1028 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:58 Download gff for
MXO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wol-RA | 163..1028 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:58 Download gff for
MXO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8302524..8302698 | 75..249 | 100 | <- | Minus |
| 2L | 8302758..8302823 | 9..74 | 98 | | Minus |
| 2L | 8301652..8301879 | 647..874 | 100 | <- | Minus |
| 2L | 8301936..8302332 | 250..646 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:24 Download gff for
MXO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8302524..8302698 | 75..249 | 100 | <- | Minus |
| arm_2L | 8302758..8302823 | 9..74 | 98 | | Minus |
| arm_2L | 8301652..8301879 | 647..874 | 100 | <- | Minus |
| arm_2L | 8301936..8302332 | 250..646 | 99 | <- | Minus |
