MXO02537.5prime Sequence
852 bp (546 high quality bases) assembled on 2007-04-13
> MXO02537.5prime
CAGTCGACATGTTGAAGTCGAACCATTTGCTCCAACGGTTTTCCAAAGAG
TACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCCCTGGTCGT
CACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCCGGAACTGT
CTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCGACGTGGAG
ATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCAAGCGGCGGGTCGT
GCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAGCAGACTTG
AATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGGACGTCATC
GTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGACGCGCCAG
TCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGGCTTCAACT
CGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGCACTACTCG
GATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGATTTCAAGTG
GATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAACGGCAATA
TTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGATGGAGCAG
GTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTACAAGTACAA
GGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGAAGTATTTA
TTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCGACTGGTGCTGGAC
CAACAGGACGTGGTGAACAAGACCAAATGCTCCGGACTGTGCGTCAGCAC
GG
MXO02537.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3988-PA | 909 | gammaSnap-RA | 1..891 | 9..899 | 4430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-RA | 1808 | CG8080-RA | 422..1266 | 8..852 | 4120 | 99.2 | Plus |
| CG8080-RE | 1402 | CG8080-RE | 57..860 | 49..852 | 3960 | 99.5 | Plus |
| CG8080-RB | 1708 | CG8080-RB | 334..1166 | 8..852 | 3930 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9090810..9091056 | 537..291 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 9091407..9091655 | 295..47 | 1230 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9090540..9090749 | 746..537 | 1035 | 99.5 | Minus |
| 2R | 25286936 | 2R | 9090377..9090485 | 852..744 | 515 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:07 has no hits.
MXO02537.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:45 Download gff for
MXO02537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3988-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:53 Download gff for
MXO02537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 418..1266 | 1..852 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:07 Download gff for
MXO02537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 418..1266 | 1..852 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:07 Download gff for
MXO02537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9091407..9091653 | 49..295 | 99 | <- | Minus |
| 2R | 9090811..9091051 | 296..536 | 100 | <- | Minus |
| 2R | 9090377..9090485 | 744..852 | 98 | <- | Minus |
| 2R | 9090543..9090749 | 537..743 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:53 Download gff for
MXO02537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4977882..4977990 | 744..852 | 98 | <- | Minus |
| arm_2R | 4978048..4978254 | 537..743 | 99 | <- | Minus |
| arm_2R | 4978316..4978556 | 296..536 | 100 | <- | Minus |
| arm_2R | 4978912..4979158 | 49..295 | 99 | <- | Minus |
