MXO02538.5prime Sequence
834 bp (770 high quality bases) assembled on 2007-04-13
> MXO02538.5prime
CAGTCGACATGGATAAACTCCCCCGCGGGAGTCTGGGCGGCGGCGGATCC
TCCAGCGGCGCGCCATCGACGGCTCCGGGCCATGAGCACCACCAACTGGA
GCAGTATCAGTACCCCAAAAACCTGATCGAGCAATATCTAAGGGCCTCCA
GCAAGATCAAGAAGTTCGAGCGGGCCGGCTTCTTCAAACGCTTTGCGCCC
AGCGTGGTCGATGTGCAGGCGGACTTCCAGCGACTGGCCTACAGCTTCGA
GGAGTCGGGCATACAGCAGTATGCGGCCATGTGCCACATTGGCTATGCCA
AGTGCGAGTCCTACGGCGGCGCACCGCAGCGCGAATCGGAGGCCTATCTG
CGGGCAGCTAGATCCTTCCTAGCGGCGCACAACGAGTCCGGGCGACTGCA
TCTGCGCACCCGCCACTCGGGATTTCGGGAGGGAGCGGTGCACTGCTATC
ACCGTGCGGCGGATCGAGCGGTGGACGGTTGCGTCTTCAAGGCGGCCATT
CTGCGCGAGTTGAAGCAGCTGCAGCGGCAGCTGGACAGCACCAGCAGCTT
TGCCTCGCCCACCCATCAGATCCATGACCTGGAAATCAGCGCCGAAACGA
GTGGCCAGCGCGGCGATTTTCGCAGTGCACTGCAGCATTACGACGACATT
GTGGACAATGTTTACGAGCGACGCGGTGCTCGCATGTACGGTGAACTATT
GCGGCGCGTTGAGGTGCTGCGTCTGCTGCTCCTAGTCCATTTGAACCTGC
CTCCCGCACGCCAGTCACCCGCCCACATCAAGCTGATCGAGTACTACTAC
AACCTGNCGCAGTTCGAGTCGCTCCCCTGTTCGG
MXO02538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9579-PA | 963 | AnnX-RA | 1..819 | 9..827 | 4045 | 99.7 | Plus |
| CG33487-PA | 369 | CG33487-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
| CG33496-PA | 369 | CG33496-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
| CG33498-PA | 366 | CG33498-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
| CG33491-PA | 369 | CG33491-RA | 1..225 | 603..827 | 1075 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 103..929 | 8..834 | 4079 | 99.5 | Plus |
| CG8134-RA | 1421 | CG8134-RA | 103..929 | 8..834 | 4079 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704593..15705239 | 188..834 | 3224 | 99.8 | Plus |
| X | 23542271 | X | 15704227..15704406 | 8..187 | 855 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:56 has no hits.
MXO02538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:46 Download gff for
MXO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9579-PA | 1..819 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:06 Download gff for
MXO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 97..929 | 1..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:24 Download gff for
MXO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 97..929 | 1..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:24 Download gff for
MXO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704221..15704406 | 1..187 | 96 | -> | Plus |
| X | 15704593..15705239 | 188..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:06 Download gff for
MXO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598254..15598439 | 1..187 | 96 | -> | Plus |
| arm_X | 15598626..15599272 | 188..834 | 99 | | Plus |
