MXO02539.5prime Sequence
827 bp (792 high quality bases) assembled on 2007-04-13
> MXO02539.5prime
CAGTCGACATGCTGGGTGTTGTTGGGGTGCTCCTCCTGGTGGCGTTCGCC
ACACTGCTGCTGTGGGATTTCCTCTGGCGCAGGCGGGGCAATGGTATATT
GCCGGGTCCGCGGCCACTTCCCTTCCTGGGCAACCTGCTCATGTATCGCG
GTCTAGATCCTGAACAAATAATGGACTTTGTCAAGAAGAACCAGCGCAAG
TACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGCCGTCTTCTC
CACGGATCCCCGAGACATTGAGTTCGTCTTGAGCAGCCAACAGCATATAA
CCAAGAATAATCTGTACAAGCTACTTAACTGCTGGCTGGGCGATGGATTG
CTGATGAGCACGGGCAGGAAGTGGCATGGACGCAGAAAGATCATCACGCC
CACCTTCCACTTCAAGATTTTGGAACAGTTCGTCGAGATATTCGACCAAC
AAAGCGCCGTAATGGTGGAGCAGCTTCAGTCGCGCGCCGACGGCATGACT
CCCATTAACATCTTTCCGGTGATTTGTCTCACTGCCCTGGATATAATCGC
AGAAACTGCAATGGGCACAAAAATCAATGCCCAAAAAAATCCCAATCTGC
CCTATGTCCAGGCTGTCAATGATGTCACCAACATCTTGATTAAACGTTTT
ATCCACGCTTGGCAGCGGGTGGACTGGATTTTCCGGCTAACGCAGCCAAC
AGAAGCTAAACGCCAGGACAAAGCTATCAAGGTAATGCACGACTTTACCG
AGAACATTATCCGTGAGCGGCGTGAAACGCTGGTTAACAACTCGAAGGAA
ACAACCCCAGAAGAGGAAGTTAATTTC
MXO02539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8386-PA | 495 | CG8386-RA | 1..492 | 9..500 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d2-RB | 2467 | CG3466-RB | 902..1720 | 9..827 | 4080 | 99.9 | Plus |
| Cyp4d2-RA | 1582 | CG3466-RA | 17..835 | 9..827 | 4080 | 99.9 | Plus |
| Cyp4d8-RA | 1573 | CG4321-RA | 373..438 | 387..452 | 180 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2177151..2177537 | 166..552 | 1920 | 99.7 | Plus |
| X | 23542271 | X | 2177721..2177925 | 623..827 | 1025 | 100 | Plus |
| X | 23542271 | X | 2176907..2177063 | 9..165 | 785 | 100 | Plus |
| X | 23542271 | X | 2177592..2177663 | 551..622 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:26 has no hits.
MXO02539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:46 Download gff for
MXO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-PA | 1..495 | 9..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:20 Download gff for
MXO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d2-RA | 8..835 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:38 Download gff for
MXO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d2-RA | 8..835 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:38 Download gff for
MXO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2176898..2177063 | 1..165 | 97 | -> | Plus |
| X | 2177151..2177537 | 166..552 | 99 | -> | Plus |
| X | 2177594..2177663 | 553..622 | 100 | -> | Plus |
| X | 2177721..2177925 | 623..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:20 Download gff for
MXO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2070931..2071096 | 1..165 | 97 | -> | Plus |
| arm_X | 2071184..2071570 | 166..552 | 99 | -> | Plus |
| arm_X | 2071627..2071696 | 553..622 | 100 | -> | Plus |
| arm_X | 2071754..2071958 | 623..827 | 100 | | Plus |
