MXO02546.5prime Sequence
872 bp (806 high quality bases) assembled on 2007-04-13
> MXO02546.5prime
CAGTCGACATGGCGATCGGTCCCGTAGTTTTTGCCGCCGCAGGCTTGCTG
CTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGAAACATTGG
ATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCTGGACTCCA
TTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGGTGCGCGAG
TACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAAGTGGATGA
GTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGCCAACGTAG
TGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGGCCTGCCAC
TACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGCGCCACTGA
CTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGACCTTGGGCG
CGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGACTTATGCTC
ATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGATGCGGACTC
TGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAAACGCAGTG
GTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTGAAGTTCTG
GTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCCAGTTTTTA
TGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGAGAAATCTC
TGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTTTAAGTCGT
GTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTAGATGAGAA
TGTTCCTGTGCTGCATTTGGTA
MXO02546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32412-PA | 1023 | CG32412-RA | 1..864 | 9..872 | 4295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| QC-RA | 1141 | CG32412-RA | 36..899 | 9..872 | 4305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5901796..5902104 | 497..189 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 5901153..5901360 | 849..642 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 5901416..5901561 | 642..497 | 730 | 100 | Minus |
| 3L | 28110227 | 3L | 5902157..5902255 | 194..96 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 5902335..5902421 | 95..9 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:23:41 has no hits.
MXO02546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:49 Download gff for
MXO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32412-PA | 1..863 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:40 Download gff for
MXO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| QC-RA | 29..898 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:39 Download gff for
MXO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| QC-RA | 29..898 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:39 Download gff for
MXO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5901796..5902101 | 192..497 | 100 | <- | Minus |
| 3L | 5902160..5902255 | 96..191 | 100 | <- | Minus |
| 3L | 5902335..5902428 | 1..95 | 94 | | Minus |
| 3L | 5901153..5901360 | 642..849 | 100 | <- | Minus |
| 3L | 5901417..5901560 | 498..641 | 100 | <- | Minus |
| 3L | 5901078..5901099 | 850..871 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:40 Download gff for
MXO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5894178..5894199 | 850..871 | 100 | <- | Minus |
| arm_3L | 5894253..5894460 | 642..849 | 100 | <- | Minus |
| arm_3L | 5894517..5894660 | 498..641 | 100 | <- | Minus |
| arm_3L | 5894896..5895201 | 192..497 | 100 | <- | Minus |
| arm_3L | 5895260..5895355 | 96..191 | 100 | <- | Minus |
| arm_3L | 5895435..5895528 | 1..95 | 94 | | Minus |
