MXO02547.5prime Sequence
615 bp (615 high quality bases) assembled on 2007-04-13
> MXO02547.5prime
CAGTCGACATGGCTGATCGGGCCCTCAAGCTGCTGGTGATCGGGGAAAGC
GGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAACAAGTTCGA
CCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAAAGTGATGC
AGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGGCGGGCGCC
GAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCTCTGGGCGC
CATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAAGCTGGAAA
CCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACATTGCCATC
ATTGTGGTAGGCATTTAGATCCACGAGGAGCGAGTTGTGGATCGCGAGGA
GGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGAGACCTCAG
CCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGGTGGAGAAG
ATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCCGGTCTGGA
CATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTGTTACTGTG
CAAGCTTTCTAGACC
MXO02547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3129-PA | 594 | Rab-RP4-RA | 1..355 | 9..363 | 1725 | 99.4 | Plus |
| CG3129-PA | 594 | Rab-RP4-RA | 359..591 | 367..599 | 1140 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab18-RA | 833 | CG3129-RA | 152..742 | 9..599 | 2865 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5671081..5671515 | 500..66 | 2115 | 99.1 | Minus |
| X | 23542271 | X | 5670918..5671018 | 599..499 | 505 | 100 | Minus |
| X | 23542271 | X | 5671603..5671661 | 67..9 | 265 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:21:02 has no hits.
MXO02547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:49 Download gff for
MXO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3129-PA | 1..594 | 9..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:05 Download gff for
MXO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 1..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:54 Download gff for
MXO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 1..599 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:54 Download gff for
MXO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5670918..5671016 | 501..599 | 100 | <- | Minus |
| X | 5671081..5671513 | 68..500 | 99 | <- | Minus |
| X | 5671603..5671665 | 1..67 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:05 Download gff for
MXO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5564951..5565049 | 501..599 | 100 | <- | Minus |
| arm_X | 5565114..5565546 | 68..500 | 99 | <- | Minus |
| arm_X | 5565636..5565698 | 1..67 | 91 | | Minus |
