MXO02548.5prime Sequence
788 bp (772 high quality bases) assembled on 2007-04-13
> MXO02548.5prime
CAGTCGACATGACGGACTACACGGAATACGTGGAAACCGCCTGGAAGTAT
GCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTCACCCTGCT
GCCGAAGTCCCTCATCCGGATGAAACGCTTCGCGGACGCGGACTACGAGG
CCAACAGGAACATGTTTCACCGCTGCTACGGCCCAGAGCTATGCTGCCAC
GTTCTGGGCCAGGAGCAGGTCGCCGGAAAGGTGAAGCCCAAGGCCAGGAA
GCCAGTGACCCGGGTGTATCCCAAGCGTCAGCAGGTGGCGCCCAAAGCGG
AGCTACCACCTCCTAGTCCAGCGCCCGTTAAGCGGAGCAACGTCACCAAG
ATAGCCAGGATGTTTGAGACGGGCAACACGCGCCAGGTGAGCCGCGTTGC
GCCCATAACGCTTCCCGAGATCAGGATGTTCGGAGCAAGCGATGAGTCCA
GAGACTCGACGCCCTGCGTCTCGCGGAAAACCAGCATCGCCAGTCAGCTC
TCGGCTCAGCTGCAGCACATCGAGCAGACGATGCACCTGTGGCAGGAACT
GGAGGAGGAGCCCTCCAAGAAGGCATCCAGCCACAACGATTGGGAGCCCA
TGGCAGTGCCGGTTCCAAGACGAACCCGTGGTACCTCTGCCACGCCCTCC
ACGGCCTCCCCGCTCTCCAGTTCCCCGGAACTGGAGCACTCCCGATCTCC
GGTTCTCCTGAGGAAGCCGCCTTCCCTGTGCCTGCAGACCAGCATGGAGG
ATATATTCCAGGTGATCGCCCGGAGTGCCGAGGAGCCG
MXO02548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18495-PB | 735 | Prosalpha6-RB | 1..732 | 9..740 | 3585 | 99.5 | Plus |
| CG18495-PA | 735 | Prosalpha6-RA | 1..732 | 9..740 | 3585 | 99.5 | Plus |
| CG30382-PA | 735 | CG30382-RA | 1..732 | 9..740 | 3585 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1171 | 8..788 | 3905 | 100 | Plus |
| CG1146-RA | 1903 | CG1146-RA | 412..1192 | 8..788 | 3905 | 100 | Plus |
| CG1146-RC | 1721 | CG1146-RC | 230..1010 | 8..788 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2491902 | 8..788 | 3905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:47 has no hits.
MXO02548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:50 Download gff for
MXO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30382-PA | 1..735 | 9..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:42 Download gff for
MXO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 342..1129 | 1..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:47 Download gff for
MXO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 223..1010 | 1..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:47 Download gff for
MXO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491115..2491902 | 1..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:42 Download gff for
MXO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491115..2491902 | 1..788 | 99 | | Plus |
