MXO02549.5prime Sequence
843 bp (724 high quality bases) assembled on 2007-04-13
> MXO02549.5prime
CAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTAATGGTGTT
GCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGAAAGACACC
CATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACACAACTGGAG
ATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCACTTCGCAG
GCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTGGAGAAGAT
CTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCTACCCTGCA
TTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTTGGCGTGAC
ATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCTGCCTACAA
TAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGTTACCTACA
CCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTTTCACCCGA
AATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGATGCATTTGT
AGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATTGGGCTCTA
AGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCCAAGTTTCC
CGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAGAGTGATGA
TGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGGCGGAACCC
ATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACAGGCGGATG
ATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCACA
MXO02549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3269-PA | 642 | Rab2-RA | 1..639 | 9..647 | 3120 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11236-RA | 1181 | CG11236-RA | 42..876 | 9..843 | 4175 | 100 | Plus |
| CG11236-RB | 1172 | CG11236-RB | 42..867 | 9..843 | 4030 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6803592..6803888 | 425..721 | 1485 | 100 | Plus |
| 2L | 23513712 | 2L | 6803310..6803524 | 212..426 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 6803052..6803254 | 9..211 | 1015 | 100 | Plus |
| 2L | 23513712 | 2L | 6803946..6804067 | 722..843 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:53 has no hits.
MXO02549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:50 Download gff for
MXO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3269-PA | 1..642 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:47 Download gff for
MXO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 37..875 | 1..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:51 Download gff for
MXO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11236-RA | 37..875 | 1..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:51 Download gff for
MXO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6803310..6803522 | 212..424 | 100 | -> | Plus |
| 2L | 6803592..6803888 | 425..721 | 100 | -> | Plus |
| 2L | 6803047..6803254 | 1..211 | 98 | -> | Plus |
| 2L | 6803946..6804066 | 722..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:47 Download gff for
MXO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6803047..6803254 | 1..211 | 98 | -> | Plus |
| arm_2L | 6803310..6803522 | 212..424 | 100 | -> | Plus |
| arm_2L | 6803592..6803888 | 425..721 | 100 | -> | Plus |
| arm_2L | 6803946..6804066 | 722..842 | 100 | | Plus |
