MXO02550.5prime Sequence
744 bp (744 high quality bases) assembled on 2007-04-13
> MXO02550.5prime
CAGTCGACATGGAGGACGCATTGACCGTCTCTGGGAAGCCAGCCGCATGC
CCCGTCGACCAGGACTGCCCCTACACCATCGAACTGATCCAGCCGGAGGA
TGGGGAGGCGGTGATAGCCATGCTCAAGACCTTTTTCTTCAAGGATGAAC
CGCTGAACACCTTCCTCGACCTTGGCGAGTGCAAGGAGCTGGAGAAGTAC
TCCCTGAAACCGCTACCCGACAACTGCTCCTACAAGGCGGTCAACAAGAA
GGGCGAGATTATCGGTGTGTTCCTAAATGGACTTATGAGGCGTCCGTCCC
CCGATGATGTGCCCGAAAAGGCGGCCGACTCCTGTGAACATCCCAAATTC
AAGAAGATCCTCTCGCTGATGGACCACGTGGAGGAGCAGTTCAACATCTT
CGACGTGTATCCCGACGAGGAGCTCATCCTGGACGGCAAGATCCTGTCGG
TGGACACCAACTACCGGGGCCTGGGCATCGCAGGCCGCCTGACGGAGAGG
GCGTACGAGTACATGCGGGAGAACGGCATCAATGTGTACCACGTGCTCTG
CTCCAGCCACTACTCCGCCCGGGTGATGGAGAAGCTGGGCTTCCACGAGG
TGTTCCGCATGCAGTTCGCCGACTACAAGCCTCAGGGAGAGGTGGTCTTC
AAGCCGGCGGCCCCGCACGTGGGCATACAGGTGATGGCCAAGGAAGTGGG
TCCCGCGAAGGCGGCGCAGACCAAGCTGGCAAGCTTTCTAGACC
MXO02550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8922-PA | 687 | RpS5a-RA | 1..684 | 9..692 | 3420 | 100 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 586..683 | 588..685 | 290 | 91.8 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 202..290 | 204..292 | 170 | 87.6 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 343..386 | 345..388 | 145 | 93.1 | Plus |
| CG7014-PA | 693 | RpS5b-RA | 484..527 | 486..529 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dat-RB | 1588 | CG3318-RB | 652..1371 | 9..728 | 3600 | 100 | Plus |
| Dat-RA | 1275 | CG3318-RA | 339..1058 | 9..728 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24157113..24157545 | 296..728 | 2165 | 100 | Plus |
| 2R | 25286936 | 2R | 24156895..24157049 | 142..296 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 24155843..24155978 | 9..144 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:38 has no hits.
MXO02550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:51 Download gff for
MXO02550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8922-PA | 1..687 | 9..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:34 Download gff for
MXO02550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dat-RA | 333..1058 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:10 Download gff for
MXO02550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dat-RA | 333..1058 | 1..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:10 Download gff for
MXO02550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24155837..24155977 | 1..143 | 97 | -> | Plus |
| 2R | 24156897..24157049 | 144..296 | 100 | -> | Plus |
| 2R | 24157114..24157545 | 297..728 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:34 Download gff for
MXO02550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20044420..20044572 | 144..296 | 100 | -> | Plus |
| arm_2R | 20044637..20045068 | 297..728 | 100 | | Plus |
| arm_2R | 20043360..20043500 | 1..143 | 97 | -> | Plus |
