MXO02552.5prime Sequence
794 bp (713 high quality bases) assembled on 2007-04-13
> MXO02552.5prime
CAGTCGACATGAATCTATCTGACCCATCGTTGAATAATTCCCTCGTGGAA
GTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATGTCCTTTCT
CCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCAGAAACCACAG
ACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGCCGGGAAGCTG
GAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCTCCATTATGAT
GATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAGCGCTACATGA
TGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTCGGAGGAGATG
TTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTGGCGTGGGTAT
GGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATTCCCGCCATGG
TAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCTGCTACTCACC
ATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACCAGAAGGAATA
TGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGGCGCCAGTTGG
CAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCGCACTTTCAGC
ATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTGATTGGAAGGA
CAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTGCGCATGGATC
ACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACGATTC
MXO02552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1519-PA | 762 | Prosalpha7-RA | 1..759 | 9..767 | 3770 | 99.8 | Plus |
| CG1519-PB | 708 | Prosalpha7-RB | 1..421 | 9..429 | 2080 | 99.7 | Plus |
| CG1519-PB | 708 | Prosalpha7-RB | 416..705 | 478..767 | 1450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33107-RA | 1067 | CG33107-RA | 75..860 | 9..794 | 3900 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22583699..22583929 | 782..552 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 22583987..22584193 | 552..346 | 1035 | 100 | Minus |
| 3R | 32079331 | 3R | 22584250..22584437 | 347..160 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 22584492..22584644 | 161..9 | 735 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:09 has no hits.
MXO02552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:51 Download gff for
MXO02552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1519-PA | 1..762 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:03 Download gff for
MXO02552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33107-RA | 66..860 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:12 Download gff for
MXO02552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33107-RA | 66..860 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:12 Download gff for
MXO02552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22583699..22583929 | 552..782 | 100 | <- | Minus |
| 3R | 22583988..22584191 | 348..551 | 100 | <- | Minus |
| 3R | 22584250..22584435 | 162..347 | 100 | <- | Minus |
| 3R | 22584492..22584653 | 1..161 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:03 Download gff for
MXO02552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18409421..18409651 | 552..782 | 100 | <- | Minus |
| arm_3R | 18409710..18409913 | 348..551 | 100 | <- | Minus |
| arm_3R | 18409972..18410157 | 162..347 | 100 | <- | Minus |
| arm_3R | 18410214..18410375 | 1..161 | 96 | | Minus |
