MXO02553.5prime Sequence
663 bp (663 high quality bases) assembled on 2007-04-13
> MXO02553.5prime
CAGTCGACATGAAAGCCATCCCCGTTTGCCTTTTGGTTCTGGTTTCGGCC
ACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTGGAGAACGA
GAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCAGTTGCTGG
ATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCACAGGGCTTT
ATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACGGTTCGAGG
CACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTCATGCACCA
GCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCAAGGATGTG
GCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGCGACGATAT
TTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGTGGGCTCGT
CCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGGCATCCATG
AGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCCAAATTGCC
AGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGTTACAGCGT
CCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGTCTATGGCA
AGCTTTCTAGACC
MXO02553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9949-PA | 945 | sina-RA | 1..800 | 9..808 | 4000 | 100 | Plus |
| CG9949-PB | 945 | sina-RB | 1..800 | 9..808 | 4000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5107-RA | 681 | CG5107-RA | 27..665 | 9..647 | 3180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25505339..25505915 | 71..647 | 2885 | 100 | Plus |
| 3R | 32079331 | 3R | 25505217..25505280 | 9..72 | 305 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:00 has no hits.
MXO02553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:52 Download gff for
MXO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9949-PB | 1..800 | 9..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:51 Download gff for
MXO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5107-RA | 2..646 | 7..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:55 Download gff for
MXO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5107-RA | 20..668 | 1..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:55 Download gff for
MXO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25505210..25505279 | 1..71 | 94 | -> | Plus |
| 3R | 25505340..25505918 | 72..651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:51 Download gff for
MXO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21330932..21331001 | 1..71 | 94 | -> | Plus |
| arm_3R | 21331062..21331640 | 72..651 | 99 | | Plus |
