MXO02554.5prime Sequence
901 bp (816 high quality bases) assembled on 2007-04-13
> MXO02554.5prime
CAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGGATGCTGTG
CGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAATCTGCACT
TGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATCCTTTGCCT
TTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTGGCAAGGTT
CTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAATCGTCAAG
GGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTGCAAGTTGG
TGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGCCCAGCATC
CATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTGTCGGCCAT
AATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGCTTCACTGG
TGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGGCGGAGCAG
GAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAAGGACAACT
CCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCTTAATCTTT
ACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAACTGCGGCAG
AAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCAAGTCCTCA
CGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTACTCCAAGG
AGCCGCTTATCCAGTTGGCAGATCTGAAATCCAAACGGGCTGTTCATATT
AACGCTGTGGGAGCCGGCGAAAGTCACTTTTCGGAGGTGGCTCCAAGATT
TACCAGCAGGCCAAGGTCTACGTGGATTGCTATGNCAATGCCGAGGCTGA
A
MXO02554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4005-PB | 1101 | CG4005-RB | 1..84 | 9..92 | 345 | 96.4 | Plus |
| CG4005-PA | 1101 | CG4005-RA | 1..84 | 9..92 | 345 | 96.4 | Plus |
| CG4005-PC | 1257 | CG4005-RC | 1..84 | 9..92 | 345 | 96.4 | Plus |
| CG4005-PB | 1101 | CG4005-RB | 96..168 | 104..176 | 290 | 95.8 | Plus |
| CG4005-PA | 1101 | CG4005-RA | 96..168 | 104..176 | 290 | 95.8 | Plus |
| CG4005-PC | 1257 | CG4005-RC | 96..168 | 104..176 | 290 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4872-RA | 1283 | CG4872-RA | 109..1002 | 9..901 | 4404 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16881455..16882250 | 9..804 | 3980 | 100 | Plus |
| X | 23542271 | X | 16882320..16882418 | 804..901 | 404 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:52 has no hits.
MXO02554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:52 Download gff for
MXO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PC | 1..184 | 9..193 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:19 Download gff for
MXO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 109..1002 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:31 Download gff for
MXO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4872-RA | 109..1002 | 9..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:31 Download gff for
MXO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16881455..16882250 | 9..804 | 100 | -> | Plus |
| X | 16882321..16882418 | 805..901 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:19 Download gff for
MXO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16775488..16776283 | 9..804 | 100 | -> | Plus |
| arm_X | 16776354..16776451 | 805..901 | 95 | | Plus |
