MXO02556.5prime Sequence
804 bp (706 high quality bases) assembled on 2007-04-13
> MXO02556.5prime
CAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTTTAAATAGA
CAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACACCGGTTGC
TGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATTTGATTCGG
GCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGTGCTTCGGG
AAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACCACCAAGTT
GGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTCCGAGCAGA
AGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGGACTTCGTA
AGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCTATGGGTTT
CAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTGGAGGCTCA
AAATGATGCGCTTCAAGAAGGAGCACTTCCGGCGGGCCATTCCGCTCAAG
GTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTGGACGTGGT
CTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGCGGAACTTA
GTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTCAGTTAAGG
GTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTCCGACGCGA
CTATTCCGTGAAACCCTCGAGAATGGGCAATGTGCAGGACAACAGTCGCT
GCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTTTCGACATC
CTCA
MXO02556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9575-PA | 606 | Rab35-RA | 1..603 | 9..611 | 3015 | 100 | Plus |
| CG14791-PC | 693 | Rab27-RC | 196..233 | 183..220 | 140 | 94.7 | Plus |
| CG14791-PB | 711 | Rab27-RB | 214..251 | 183..220 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30412-RA | 1063 | CG30412-RA | 10..807 | 7..804 | 3960 | 99.7 | Plus |
| CG30412-RC | 1072 | CG30412-RC | 10..816 | 7..804 | 3860 | 98.6 | Plus |
| CG30412-RB | 1160 | CG30412-RB | 332..904 | 232..804 | 2835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23318445..23319017 | 804..232 | 2835 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23319114..23319339 | 232..7 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:18 has no hits.
MXO02556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:53 Download gff for
MXO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9575-PA | 1..606 | 9..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:21 Download gff for
MXO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..806 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:10 Download gff for
MXO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..806 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:10 Download gff for
MXO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23319114..23319342 | 1..232 | 98 | | Minus |
| 2R | 23318446..23319016 | 233..803 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:21 Download gff for
MXO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19205969..19206539 | 233..803 | 99 | <- | Minus |
| arm_2R | 19206637..19206865 | 1..232 | 98 | | Minus |
