MXO02560.5prime Sequence
494 bp (432 high quality bases) assembled on 2007-04-13
> MXO02560.5prime
CAATCGACATGGAGGCGTCACCTTGTATAAATTTGCGGCCGGTGGTGAAC
GTTCCTACTATTTATAAGGATCCCTGGTACATGATCACAGTGCTGGTCCT
CTATCTGTACTTCGTCACCAAAGCGGGTCCTCATTTCATGGAATGGCGCA
AACCTTACTAGCTCAAGCGACTTATCTTGCTACATAATTTCATCCATGTG
GTTTCCTGCATATATGCTATCAAAGAGGTCCTGTAATTTACGGACAACAC
CATATACATCTTTTGGAAGTGCCGCGACATCAGGAGCAGCCCATAGCTCG
TGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGAATATCTCT
GAGCTGATTGAAACCCTGATCTTTGTGCTTCGCAAGAAACAAAACCAGGT
GTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCTGGTCTACG
CACTGATCAACTTCAACAAAAATGGTTCTGCTGCTTACTTCTGC
MXO02560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30008-PA | 801 | CG30008-RA | 17..486 | 25..494 | 2050 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30008-RA | 965 | CG30008-RA | 99..588 | 5..494 | 2210 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9890438..9890688 | 226..476 | 1150 | 97.2 | Plus |
| 2R | 25286936 | 2R | 9890052..9890157 | 25..130 | 500 | 98.1 | Plus |
| 2R | 25286936 | 2R | 9890287..9890382 | 134..229 | 450 | 97.9 | Plus |
Blast to na_te.dros performed 2014-11-28 21:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5644..5684 | 125..85 | 106 | 73.2 | Minus |
MXO02560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:54 Download gff for
MXO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-PA | 1..486 | 9..494 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:50 Download gff for
MXO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 95..588 | 1..494 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:57 Download gff for
MXO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 95..588 | 1..494 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:57 Download gff for
MXO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9890052..9890160 | 25..133 | 97 | -> | Plus |
| 2R | 9890287..9890380 | 134..227 | 97 | -> | Plus |
| 2R | 9890440..9890686 | 228..474 | 97 | -> | Plus |
| 2R | 9890745..9890764 | 475..494 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:50 Download gff for
MXO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5777792..5777885 | 134..227 | 97 | -> | Plus |
| arm_2R | 5777557..5777665 | 25..133 | 97 | -> | Plus |
| arm_2R | 5777945..5778191 | 228..474 | 97 | -> | Plus |
| arm_2R | 5778250..5778269 | 475..494 | 100 | | Plus |
