MXO02561.5prime Sequence
768 bp (689 high quality bases) assembled on 2007-04-13
> MXO02561.5prime
CAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGGCGGTTGTC
ACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAACTGGCCAA
TGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACTCATTGAGG
CACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCCGGCAATGT
GACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGGATTCGTGA
AAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCATCCTGAAGG
CCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAACTGTTCGAC
ACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTGAAACACAT
GGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAGCGTGCTTG
GCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTTATCCGGCC
ACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAGGAAATACA
TTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGGCATGGTAG
ACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGCTGCCCAAA
CTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTGAACACTCC
CGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCGGAAGGTCG
ATGCAAGCTTTCTAGACC
MXO02561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8445-PA | 1416 | CG8445-RA | 381..876 | 389..884 | 2480 | 100 | Plus |
| CG8445-PB | 1416 | CG8445-RB | 381..876 | 389..884 | 2480 | 100 | Plus |
| CG8445-PA | 1416 | CG8445-RA | 1..376 | 9..384 | 1880 | 100 | Plus |
| CG8445-PB | 1416 | CG8445-RB | 1..376 | 9..384 | 1880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdhB-RB | 1103 | CG7077-RB | 217..961 | 8..752 | 3725 | 100 | Plus |
| rdhB-RA | 971 | CG7077-RA | 85..829 | 8..752 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22355948..22356122 | 578..752 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 22352529..22352696 | 148..315 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 22352329..22352471 | 8..150 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 22355687..22355827 | 438..578 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 22352748..22352875 | 315..442 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:02 has no hits.
MXO02561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:55 Download gff for
MXO02561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8445-PB | 1..890 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:36 Download gff for
MXO02561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdhB-RA | 75..836 | 1..761 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:46 Download gff for
MXO02561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdhB-RA | 75..836 | 1..761 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:46 Download gff for
MXO02561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22355949..22356129 | 579..761 | 97 | | Plus |
| 3R | 22352531..22352696 | 150..315 | 100 | -> | Plus |
| 3R | 22352749..22352875 | 316..442 | 100 | -> | Plus |
| 3R | 22355692..22355827 | 443..578 | 100 | -> | Plus |
| 3R | 22352319..22352470 | 1..149 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:36 Download gff for
MXO02561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18178253..18178418 | 150..315 | 100 | -> | Plus |
| arm_3R | 18178471..18178597 | 316..442 | 100 | -> | Plus |
| arm_3R | 18181414..18181549 | 443..578 | 100 | -> | Plus |
| arm_3R | 18181671..18181851 | 579..761 | 97 | | Plus |
| arm_3R | 18178041..18178192 | 1..149 | 97 | -> | Plus |
