MXO02563.5prime Sequence
861 bp (723 high quality bases) assembled on 2007-04-13
> MXO02563.5prime
CAGTCGACATGTTCAAGCATACTTTCACAGATTTGACCAAGTTGCCGAAA
CAACGGGTTCGCCAATGGCTATCCACATTCGAATCCGTGATCCTTGATGC
CGATGGAGTCCTTTGGCACTTCTCGAAGGCAATTGACGGAGCTGTGGATA
CTTTCAATTACATGAACACCACCGGCCGAAAGATTTTCATAATCTCTAAC
AATTCCGAGATTTCAAGGCAGGAGATGGCCGATAAGGCGAAAGGTTTTGG
CATAGAGATCAAGGAGGATAATGTACTGACTTCGTCCTTTTCGTGTGCCA
ATTTCCTGGCTGTCAAAAACTTTCAGAAGAAGGTTTTCGTCATGGGCGAG
AAAGGAGTTCATTTTGAGCTGGAAAAATTTGGCATCTGCTCCCTGAAAAT
GTCCGAAAAGCTGGAGAAGCCCATGCACGAGTTCGTCACTGAGTTGGAAC
TGGATCCCGATGTGGGAGCAGTAATTGTGGGCCGGGATGAGGGTTTCAAC
ATGGCCAAGCTGGTTCGAACCGGCAGCTATCTGCTGAATCCCGATGTCAT
TTTTCTCGGCACCTGTTTAGATGCCGCCTATCCCATCGGAAATAACCGGG
TGATGGTGGGCGCCGGTGCCACCTTGGCGGCCATGAAAGCCTATACCGGA
AGGTCGCCGCTGGTGCTGGGAAAACCCAATCCCTGGATGGCGTCTACACT
CATGCAGTCCGGGGCCATAAAGCCGGAAACCACACTAATGGTGGGCGATA
CACTGCAGACGGATATGCACTTCGCTTCCAACTGTGGTTTCCAATCCCTG
ATGGTCGGCAGTGGTGTGAACACCCCGAGGGAAGTGCAGCAGATCATCGA
GGAGGGTGACC
MXO02563.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:10:18 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32488-RB | 1245 | CG32488-RB | 22..874 | 9..861 | 4250 | 99.9 | Plus |
| CG32488-RA | 1040 | CG32488-RA | 22..874 | 9..861 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3015306..3016048 | 751..9 | 3715 | 100 | Minus |
| 3L | 28110227 | 3L | 3015132..3015241 | 861..752 | 535 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:03 has no hits.
MXO02563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:25 Download gff for
MXO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 18..874 | 2..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:39 Download gff for
MXO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32488-RA | 18..874 | 2..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:39 Download gff for
MXO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3015132..3015241 | 752..861 | 99 | <- | Minus |
| 3L | 3015306..3016052 | 2..751 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:25 Download gff for
MXO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3015132..3015241 | 752..861 | 99 | <- | Minus |
| arm_3L | 3015306..3016052 | 2..751 | 99 | | Minus |
