MXO02565.5prime Sequence
717 bp (717 high quality bases) assembled on 2007-04-13
> MXO02565.5prime
CAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGGCTTTATTC
CTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTGCGCAATTC
AGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTGTTCGAGAA
CCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGGACGTTTGC
GTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGCTTTTCTCA
AATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGATCAATGTC
AAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGGATTTCAAA
TGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAGGGTGCCAC
CGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGCCAATTCCT
ACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCCAGAGAGGA
TGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGACTCGAAATG
CTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTGCAACAACT
ACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTAAAAAACTC
TTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAATTGCTGAA
TGCAAGCTTTCTAGACC
MXO02565.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6601-PA | 627 | Rab6-RA | 1..624 | 9..632 | 2920 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4377-RA | 788 | CG4377-RA | 45..737 | 9..701 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21835499..21835825 | 701..375 | 1635 | 100 | Minus |
| 2R | 25286936 | 2R | 21836103..21836313 | 219..9 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 21835890..21836044 | 374..220 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:46 has no hits.
MXO02565.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:56 Download gff for
MXO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6601-PA | 1..627 | 9..633 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:16 Download gff for
MXO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4377-RA | 45..744 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:53 Download gff for
MXO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4377-RA | 45..744 | 9..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:53 Download gff for
MXO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21835491..21835825 | 375..710 | 98 | <- | Minus |
| 2R | 21835890..21836044 | 220..374 | 100 | <- | Minus |
| 2R | 21836103..21836313 | 9..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:16 Download gff for
MXO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17722996..17723330 | 375..710 | 98 | <- | Minus |
| arm_2R | 17723395..17723549 | 220..374 | 100 | <- | Minus |
| arm_2R | 17723608..17723818 | 9..219 | 100 | | Minus |
