MXO02566.5prime Sequence
892 bp (810 high quality bases) assembled on 2007-04-13
> MXO02566.5prime
CAGTCGACATGTCCGTAAACTTGCACGGTTCTGAAGAAAAGATGGAGCTG
AAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGCATCGAGAA
GCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCCGCCGGATC
GGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACATGCACATC
AAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATGAAGGTGGC
TGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACGCTTTGCCA
AGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTACAGCTGCG
CAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTTCCGTCTGG
AAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCGCCACAAGC
AAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTTCAGATAAA
GCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTTCAGAACGT
CTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCCTGCCAGTG
TCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTGGTCCGTCA
TTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTTCCACCAGT
GCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGATGGAGGACG
TCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGCTATCCATG
GCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGCCTGGAGCG
CTCGATGGCCCNAATAAGTCAGGAGTTGCACTGCCGCAACCG
MXO02566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8725-PA | 1224 | CSN4-RA | 97..238 | 105..246 | 535 | 95 | Plus |
| CG8725-PA | 1224 | CSN4-RA | 1..93 | 9..101 | 365 | 95.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stil-RA | 1171 | CG8592-RA | 83..966 | 9..892 | 4394 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12571335..12571678 | 549..892 | 1709 | 99.7 | Plus |
| 2R | 25286936 | 2R | 12570718..12570992 | 202..476 | 1375 | 100 | Plus |
| 2R | 25286936 | 2R | 12570449..12570643 | 9..203 | 960 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12571143..12571218 | 475..550 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:08 has no hits.
MXO02566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:21:57 Download gff for
MXO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8725-PA | 1..238 | 9..246 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:38 Download gff for
MXO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stil-RA | 83..966 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:40 Download gff for
MXO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stil-RA | 83..966 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:40 Download gff for
MXO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12571335..12571678 | 549..892 | 99 | | Plus |
| 2R | 12570449..12570643 | 9..203 | 99 | -> | Plus |
| 2R | 12570720..12570992 | 204..476 | 100 | -> | Plus |
| 2R | 12571145..12571216 | 477..548 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:38 Download gff for
MXO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8457954..8458148 | 9..203 | 99 | -> | Plus |
| arm_2R | 8458225..8458497 | 204..476 | 100 | -> | Plus |
| arm_2R | 8458650..8458721 | 477..548 | 100 | -> | Plus |
| arm_2R | 8458840..8459183 | 549..892 | 99 | | Plus |
